Examples with NotExistException com.odysseusinc.arachne.portal.exception.NotExistException used on opensource projects

Example 11 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BasePaperServiceImpl method delete.

@PreAuthorize("hasPermission(#id, 'Paper', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).EDIT_PAPER)")
@Transactional
@Override
public void delete(Long id) throws FileNotFoundException {
    final Paper paper = Optional.of(paperRepository.getOne(id)).orElseThrow(() -> new NotExistException(Paper.class));
    Stream.concat(paper.getPapers().stream(), paper.getProtocols().stream()).forEach(file -> {
        try {
            deleteFile(id, file.getUuid(), file.getType());
        } catch (FileNotFoundException ex) {
            log.error("Paper file with uuid={} is not found", file.getUuid());
        }
    });
    if (paperRepository.deleteById(id) == 0) {
        throw new NotExistException(Paper.class);
    }
}

Example 12 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method addParticipant.

@Override
@PreAuthorize("hasPermission(#studyId, 'Study', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).INVITE_CONTRIBUTOR)")
public UserStudy addParticipant(IUser createdBy, Long studyId, Long participantId, ParticipantRole role) throws NotExistException, AlreadyExistException {
    Study study = Optional.ofNullable(studyRepository.findOne(studyId)).orElseThrow(() -> new NotExistException(EX_STUDY_NOT_EXISTS, Study.class));
    IUser participant = Optional.ofNullable(userService.findOne(participantId)).orElseThrow(() -> new NotExistException(EX_USER_NOT_EXISTS, User.class));
    UserStudy studyLink = userStudyRepository.findOneByStudyIdAndUserId(study.getId(), participant.getId());
    if (studyLink == null) {
        // If user is invited for first time - create new link
        studyLink = new UserStudy();
    } else if (studyLink.getStatus().isPendingOrApproved()) {
        // Otherwise - invitation is pending or was already accepted. Cannot change or recreate
        throw new AlreadyExistException(EX_PARTICIPANT_EXISTS);
    }
    studyLink.setCreatedBy(createdBy);
    studyLink.setUser(participant);
    studyLink.setStudy(study);
    studyLink.setRole(role);
    studyLink.setCreated(new Date());
    studyLink.setStatus(ParticipantStatus.PENDING);
    studyLink.setDeletedAt(null);
    studyLink.setComment(null);
    studyLink.setToken(UUID.randomUUID().toString().replace("-", ""));
    userStudyRepository.save(studyLink);
    arachneMailSender.send(new InvitationCollaboratorMailSender(WebSecurityConfig.getDefaultPortalURI(), participant, studyLink));
    return studyLink;
}

Example 13 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method removeParticipant.

@Override
@PreAuthorize("hasPermission(#id, 'Study'," + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).EDIT_STUDY)")
public void removeParticipant(Long id, Long participantId) throws NotExistException, PermissionDeniedException, ValidationException {
    Study study = getById(id);
    IUser participant = userService.findOne(participantId);
    UserStudy studyLink = Optional.ofNullable(userStudyRepository.findOneByStudyAndUser(study, participant)).orElseThrow(() -> new NotExistException(UserStudy.class));
    checkLastLeadInvestigator(studyLink, study);
    if (userStudyRepository.hardRemoveIfNotTracked(id, participantId) == 0) {
        userStudyRepository.delete(studyLink);
    }
}

Example 14 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseUserServiceImpl method setActiveTenant.

@Override
public void setActiveTenant(U user, Long tenantId) {
    for (Tenant t : user.getTenants()) {
        if (t.getId().equals(tenantId)) {
            user.setActiveTenant(t);
            userRepository.save(user);
            return;
        }
    }
    throw new NotExistException(Tenant.class);
}

Example 15 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class CommentServiceImpl method getTopic.

@Cacheable("comments")
@Override
public CommentTopic getTopic(Long id) throws NotExistException {
    final CommentTopic commentTopic = commentTopicRepository.getOne(id);
    if (commentTopic == null) {
        final String message = String.format(TOPIC_NOT_EXIST_EXCEPTION, id);
        throw new NotExistException(message, CommentTopic.class);
    }
    final List<Comment> comments = commentRepository.getAllByTopicIdAndParentIsNull(id);
    comments.forEach(c -> Hibernate.initialize(c.getAuthor().getRoles()));
    commentTopic.setComments(comments);
    return commentTopic;
}