Examples with NotExistException com.odysseusinc.arachne.portal.exception.NotExistException used on opensource projects

Example 21 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method addDataSource.

@Override
// ordering annotations is important to check current participants before method invoke
@PreAuthorize("hasPermission(#studyId, 'Study', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).INVITE_DATANODE)")
public StudyDataSourceLink addDataSource(IUser createdBy, Long studyId, Long dataSourceId) throws NotExistException, AlreadyExistException {
    T study = studyRepository.findOne(studyId);
    if (study == null) {
        throw new NotExistException("study not exist", Study.class);
    }
    DS dataSource = dataSourceService.getNotDeletedById(dataSourceId);
    if (dataSource == null) {
        throw new NotExistException("dataSource not exist", DataSource.class);
    }
    StudyDataSourceLink studyDataSourceLink = studyDataSourceLinkRepository.findByDataSourceIdAndStudyId(dataSource.getId(), study.getId());
    if (studyDataSourceLink == null) {
        studyDataSourceLink = new StudyDataSourceLink();
    } else if (studyDataSourceLink.getStatus().isPendingOrApproved()) {
        throw new AlreadyExistException();
    }
    studyDataSourceLink.setStudy(study);
    studyDataSourceLink.setDataSource(dataSource);
    studyDataSourceLink.setCreated(new Date());
    studyDataSourceLink.setToken(UUID.randomUUID().toString());
    studyDataSourceLink.setCreatedBy(createdBy);
    studyDataSourceLink.setDeletedAt(null);
    AddDataSourceStrategy<DS> strategy = addDataSourceStrategyFactory.getStrategy(dataSource);
    strategy.addDataSourceToStudy(createdBy, dataSource, studyDataSourceLink);
    return studyDataSourceLink;
}

Example 22 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseStudyServiceImpl method updateParticipantRole.

@Override
@PreAuthorize("hasPermission(#studyId, 'Study', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).INVITE_CONTRIBUTOR)")
public UserStudy updateParticipantRole(Long studyId, Long participantId, ParticipantRole role) throws NotExistException, AlreadyExistException, ValidationException {
    Study study = Optional.ofNullable(studyRepository.findOne(studyId)).orElseThrow(() -> new NotExistException(EX_STUDY_NOT_EXISTS, Study.class));
    IUser participant = Optional.ofNullable(userService.findOne(participantId)).orElseThrow(() -> new NotExistException(EX_USER_NOT_EXISTS, User.class));
    UserStudy studyLink = Optional.ofNullable(userStudyRepository.findOneByStudyAndUser(study, participant)).orElseThrow(() -> new NotExistException(UserStudy.class));
    checkLastLeadInvestigator(studyLink, study);
    studyLink.setRole(role);
    return userStudyRepository.save(studyLink);
}

Example 23 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseAnalysisController method list.

@ApiOperation("List analyses.")
@RequestMapping(value = "/api/v1/analysis-management/analyses", method = GET)
public JsonResult<List<D>> list(Principal principal, @RequestParam("study-id") Long studyId) throws PermissionDeniedException, NotExistException {
    JsonResult<List<D>> result;
    IUser user = userService.getByEmail(principal.getName());
    if (user == null) {
        result = new JsonResult<>(PERMISSION_DENIED);
        return result;
    }
    Iterable<T> analyses = analysisService.list(user, studyId);
    result = new JsonResult<>(NO_ERROR);
    List<D> analysisDTOs = StreamSupport.stream(analyses.spliterator(), false).map(analysis -> conversionService.convert(analysis, getAnalysisDTOClass())).collect(Collectors.toList());
    result.setResult(analysisDTOs);
    return result;
}

Example 24 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseUserController method linkUserToDataNode.

@ApiOperation("Link U to DataNode")
@RequestMapping(value = "/api/v1/user-management/datanodes/{datanodeSid}/users", method = POST)
public JsonResult linkUserToDataNode(@PathVariable("datanodeSid") Long datanodeId, @RequestBody CommonLinkUserToDataNodeDTO linkUserToDataNode) throws NotExistException, AlreadyExistException {
    final DN dataNode = Optional.ofNullable(baseDataNodeService.getById(datanodeId)).orElseThrow(() -> new NotExistException(String.format(DATA_NODE_NOT_FOUND_EXCEPTION, datanodeId), DataNode.class));
    final U user = userService.getByUnverifiedEmailInAnyTenant(linkUserToDataNode.getUserName());
    baseDataNodeService.linkUserToDataNode(dataNode, user);
    return new JsonResult(NO_ERROR);
}

Example 25 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class StudyTypeController method update.

@ApiOperation(value = "Edit study type.", hidden = true)
@RequestMapping(value = "/api/v1/admin/study-types/{studyTypeId}", method = RequestMethod.PUT)
public JsonResult update(@PathVariable("studyTypeId") Long id, @RequestBody @Valid StudyTypeDTO studyTypeDTO, BindingResult binding) {
    JsonResult result = null;
    if (binding.hasErrors()) {
        result = new JsonResult<>(JsonResult.ErrorCode.VALIDATION_ERROR);
        for (FieldError fieldError : binding.getFieldErrors()) {
            result.getValidatorErrors().put(fieldError.getField(), fieldError.getDefaultMessage());
        }
    } else {
        try {
            StudyType studyType = conversionService.convert(studyTypeDTO, StudyType.class);
            studyType = studyTypeService.update(studyType);
            result = new JsonResult<>(JsonResult.ErrorCode.NO_ERROR);
            result.setResult(studyType);
        } catch (ConverterNotFoundException ex) {
            log.error(ex.getMessage(), ex);
            result = new JsonResult<>(JsonResult.ErrorCode.SYSTEM_ERROR);
            result.setErrorMessage(ex.getMessage());
        } catch (NotExistException ex) {
            log.error(ex.getMessage(), ex);
            result = new JsonResult<>(JsonResult.ErrorCode.VALIDATION_ERROR);
            result.getValidatorErrors().put("id", "Status with id=" + id + " not found");
            result.setErrorMessage(ex.getMessage());
        } catch (NotUniqueException ex) {
            log.error(ex.getMessage(), ex);
            result = new JsonResult<>(JsonResult.ErrorCode.VALIDATION_ERROR);
            result.getValidatorErrors().put(ex.getField(), ex.getMessage());
            result.setErrorMessage(ex.getMessage());
        } catch (Exception ex) {
            log.error(ex.getMessage(), ex);
            result = new JsonResult<>(JsonResult.ErrorCode.SYSTEM_ERROR);
            result.setErrorMessage(ex.getMessage());
        }
    }
    return result;
}