Examples with NotExistException com.odysseusinc.arachne.portal.exception.NotExistException used on opensource projects

Example 6 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class StudyTypeController method delete.

@ApiOperation(value = "Delete study type.", hidden = true)
@RequestMapping(value = "/api/v1/admin/study-types/{studyTypeId}", method = RequestMethod.DELETE)
public JsonResult delete(@PathVariable("studyTypeId") Long id) {
    JsonResult result = null;
    if (id == null) {
        result = new JsonResult<>(JsonResult.ErrorCode.VALIDATION_ERROR);
        result.getValidatorErrors().put("studyTypeId", "cannot be null");
    } else {
        try {
            studyTypeService.delete(id);
            result = new JsonResult<>(JsonResult.ErrorCode.NO_ERROR);
            result.setResult(Boolean.TRUE);
        } catch (NotExistException ex) {
            log.error(ex.getMessage(), ex);
            result = new JsonResult<>(JsonResult.ErrorCode.VALIDATION_ERROR);
            result.getValidatorErrors().put("studyTypeId", "Status with id=" + id + " not found");
            result.setErrorMessage(ex.getMessage());
        } catch (Exception ex) {
            log.error(ex.getMessage(), ex);
            result = new JsonResult<>(JsonResult.ErrorCode.SYSTEM_ERROR);
            result.setErrorMessage(ex.getMessage());
        }
    }
    return result;
}

Example 7 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionController method deleteSubmissionResultsByUuid.

@ApiOperation("Delete manually uploaded submission result file")
@RequestMapping(value = "/api/v1/analysis-management/submissions/{submissionId}/result/{fileUuid}", method = DELETE)
public JsonResult<Boolean> deleteSubmissionResultsByUuid(@PathVariable("submissionId") Long id, @PathVariable("fileUuid") String fileUuid) {
    LOGGER.info("deleting result file for submission with id={} having uuid={}", id, fileUuid);
    JsonResult.ErrorCode errorCode;
    Boolean hasResult;
    try {
        ResultFile resultFile = submissionService.getResultFileByPath(contentStorageService.getFileByIdentifier(fileUuid).getPath());
        hasResult = submissionService.deleteSubmissionResultFile(id, resultFile);
        errorCode = JsonResult.ErrorCode.NO_ERROR;
    } catch (NotExistException e) {
        LOGGER.warn("Submission was not found, id: {}", id);
        errorCode = JsonResult.ErrorCode.VALIDATION_ERROR;
        hasResult = false;
    } catch (ValidationException e) {
        LOGGER.warn("Result file was not deleted", e);
        errorCode = JsonResult.ErrorCode.VALIDATION_ERROR;
        hasResult = false;
    }
    JsonResult<Boolean> result = new JsonResult<>(errorCode);
    result.setResult(hasResult);
    return result;
}

Example 8 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionController method createSubmission.

@ApiOperation("Create and send submission.")
@RequestMapping(value = "/api/v1/analysis-management/{analysisId}/submissions", method = POST)
public JsonResult<List<DTO>> createSubmission(Principal principal, @RequestBody @Validated CreateSubmissionsDTO createSubmissionsDTO, @PathVariable("analysisId") Long analysisId) throws PermissionDeniedException, NotExistException, IOException, NoExecutableFileException, ValidationException {
    final JsonResult<List<DTO>> result;
    if (principal == null) {
        throw new PermissionDeniedException();
    }
    IUser user = userService.getByEmail(principal.getName());
    if (user == null) {
        throw new PermissionDeniedException();
    }
    Analysis analysis = analysisService.getById(analysisId);
    final List<Submission> submissions = AnalysisHelper.createSubmission(submissionService, createSubmissionsDTO.getDataSources(), user, analysis);
    final List<DTO> submissionDTOs = submissions.stream().map(s -> conversionService.convert(s, getSubmissionDTOClass())).collect(Collectors.toList());
    result = new JsonResult<>(NO_ERROR);
    result.setResult(submissionDTOs);
    return result;
}

Example 9 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BaseAnalysisServiceImpl method processAnalysisUnlockRequest.

@Override
public void processAnalysisUnlockRequest(IUser user, Long invitationId, Boolean invitationAccepted) throws NotExistException {
    final Long userId = user.getId();
    final AnalysisUnlockRequest exist = analysisUnlockRequestRepository.findOneByIdAndLeadId(invitationId, userId).orElseThrow(() -> {
        final String message = String.format(UNLOCK_REQUEST_NOT_EXIST_EXCEPTION, invitationId, userId);
        return new NotExistException(message, AnalysisUnlockRequest.class);
    });
    if (invitationAccepted != null && invitationAccepted) {
        exist.setStatus(AnalysisUnlockRequestStatus.APPROVED);
        final A analysis = (A) exist.getAnalysis();
        analysis.setLocked(false);
        analysisRepository.save(analysis);
    } else {
        exist.setStatus(AnalysisUnlockRequestStatus.DECLINED);
    }
    analysisUnlockRequestRepository.save(exist);
}

Example 10 with NotExistException

use of com.odysseusinc.arachne.portal.exception.NotExistException in project ArachneCentralAPI by OHDSI.

the class BasePaperServiceImpl method deleteFile.

@PreAuthorize("hasPermission(#paperId, 'Paper', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).LIMITED_EDIT_PAPER)")
// @Transactional not usable for this method.
@Override
public void deleteFile(Long paperId, String fileUuid, PaperFileType fileType) throws FileNotFoundException {
    AbstractPaperFile paperFile;
    switch(fileType) {
        case PAPER:
            {
                paperFile = paperPaperFileRepository.findByPaperIdAndUuid(paperId, fileUuid).orElseThrow(() -> new NotExistException(AbstractPaperFile.class));
                paperPaperFileRepository.delete(paperFile.getId());
                break;
            }
        case PROTOCOL:
            {
                paperFile = paperProtocolFileRepository.findByPaperIdAndUuid(paperId, fileUuid).orElseThrow(() -> new NotExistException(AbstractPaperFile.class));
                paperProtocolFileRepository.delete(paperFile.getId());
                break;
            }
        default:
            {
                throw new IllegalArgumentException("Illegal filetype: " + fileType);
            }
    }
    fileService.delete(paperFile);
}