Examples with Dimensions net.imglib2.Dimensions used on opensource projects

Example 36 with Dimensions

use of net.imglib2.Dimensions in project imagej-ops by imagej.

the class CreateLabelingTest method testImageFactory.

@SuppressWarnings("unchecked")
@Test
public void testImageFactory() {
    final Dimensions dim = new FinalDimensions(10, 10, 10);
    assertEquals("Labeling Factory: ", ArrayImgFactory.class, ((Img<?>) ((ImgLabeling<String, ?>) ops.run(DefaultCreateImgLabeling.class, dim, null, new ArrayImgFactory<IntType>())).getIndexImg()).factory().getClass());
    assertEquals("Labeling Factory: ", CellImgFactory.class, ((Img<?>) ((ImgLabeling<String, ?>) ops.run(DefaultCreateImgLabeling.class, dim, null, new CellImgFactory<IntType>())).getIndexImg()).factory().getClass());
}

Example 37 with Dimensions

use of net.imglib2.Dimensions in project imagej-ops by imagej.

the class CreateImgTest method testImageMinimum.

@Test
public void testImageMinimum() {
    final Random randomGenerator = new Random();
    for (int i = 0; i < TEST_SIZE; i++) {
        // between 2 and 5 dimensions
        final long[] max = new long[randomGenerator.nextInt(4) + 2];
        final long[] min = new long[max.length];
        // between 2 and 10 pixels per dimensions
        for (int j = 0; j < max.length; j++) {
            max[j] = randomGenerator.nextInt(9) + 2;
            min[j] = Math.max(0, max[j] - randomGenerator.nextInt(4));
        }
        // create img
        final Img<?> img = (Img<?>) ops.run(CreateImgFromInterval.class, new FinalInterval(min, max));
        assertArrayEquals("Image Minimum:", min, Intervals.minAsLongArray(img));
        assertArrayEquals("Image Maximum:", max, Intervals.maxAsLongArray(img));
    }
}

Example 38 with Dimensions

use of net.imglib2.Dimensions in project TrakEM2 by trakem2.

the class LinearIntensityMap method run.

@SuppressWarnings({ "rawtypes", "unchecked" })
public <S extends NumericType<S>> void run(final RandomAccessibleInterval<S> image) {
    assert image.numDimensions() == dimensions.numDimensions() : "Number of dimensions do not match.";
    final double[] s = new double[dimensions.numDimensions()];
    for (int d = 0; d < s.length; ++d) s[d] = image.dimension(d) / dimensions.dimension(d);
    final Scale scale = new Scale(s);
    // System.out.println( "translation-n " + translation.numDimensions() );
    final RandomAccessibleInterval<RealComposite<T>> stretchedCoefficients = Views.offsetInterval(Views.raster(RealViews.transform(RealViews.transform(coefficients, translation), scale)), image);
    /* decide on type which mapping to use */
    final S t = image.randomAccess().get();
    if (ARGBType.class.isInstance(t))
        mapARGB(Views.flatIterable((RandomAccessibleInterval<ARGBType>) image), Views.flatIterable(stretchedCoefficients));
    else if (RealComposite.class.isInstance(t))
        mapComposite(Views.flatIterable((RandomAccessibleInterval) image), Views.flatIterable(stretchedCoefficients));
    else if (RealType.class.isInstance(t)) {
        final RealType<?> r = (RealType) t;
        if (r.getMinValue() > -Double.MAX_VALUE || r.getMaxValue() < Double.MAX_VALUE)
            // TODO Bug in javac does not enable cast from RandomAccessibleInterval< S > to RandomAccessibleInterval< RealType >, remove when fixed
            mapCrop(Views.flatIterable((RandomAccessibleInterval<RealType>) (Object) image), Views.flatIterable(stretchedCoefficients));
        else
            // TODO Bug in javac does not enable cast from RandomAccessibleInterval< S > to RandomAccessibleInterval< RealType >, remove when fixed
            map(Views.flatIterable((RandomAccessibleInterval<RealType>) (Object) image), Views.flatIterable(stretchedCoefficients));
    }
}