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Example 6 with DiamondShape

use of net.imglib2.algorithm.neighborhood.DiamondShape in project imagej-ops by imagej.

the class DilationTest method testSingleDilate.

@Test
public void testSingleDilate() {
    final Shape shape = new DiamondShape(1);
    @SuppressWarnings("unchecked") final Img<ByteType> out1 = (Img<ByteType>) ops.run(DefaultDilate.class, Img.class, in, shape, false);
    final Img<ByteType> out2 = Dilation.dilate(in, shape, 1);
    final Cursor<ByteType> c1 = out1.cursor();
    final Cursor<ByteType> c2 = out2.cursor();
    while (c1.hasNext()) assertEquals(c1.next().get(), c2.next().get());
}
Also used : Img(net.imglib2.img.Img) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 7 with DiamondShape

use of net.imglib2.algorithm.neighborhood.DiamondShape in project imagej-ops by imagej.

the class DilationTest method testSingleDilateFull.

@Test
public void testSingleDilateFull() {
    final Shape shape = new DiamondShape(1);
    @SuppressWarnings("unchecked") final Img<ByteType> out1 = (Img<ByteType>) ops.run(DefaultDilate.class, Img.class, in, shape, true);
    final Img<ByteType> out2 = Dilation.dilateFull(in, shape, 1);
    final Cursor<ByteType> c1 = out1.cursor();
    final Cursor<ByteType> c2 = out2.cursor();
    while (c1.hasNext()) assertEquals(c1.next().get(), c2.next().get());
}
Also used : Img(net.imglib2.img.Img) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 8 with DiamondShape

use of net.imglib2.algorithm.neighborhood.DiamondShape in project imagej-ops by imagej.

the class ErosionTest method testListErodeFull.

@Test
public void testListErodeFull() {
    final List<Shape> shapes = new ArrayList<>();
    shapes.add(new DiamondShape(1));
    shapes.add(new DiamondShape(1));
    shapes.add(new RectangleShape(1, false));
    shapes.add(new HorizontalLineShape(2, 1, false));
    final Img<ByteType> out2 = Erosion.erodeFull(in, shapes, 1);
    @SuppressWarnings("unchecked") final IterableInterval<ByteType> out1 = (IterableInterval<ByteType>) ops.run(ListErode.class, IterableInterval.class, in, shapes, true);
    assertIterationsEqual(out1, out2);
}
Also used : DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ArrayList(java.util.ArrayList) IterableInterval(net.imglib2.IterableInterval) ByteType(net.imglib2.type.numeric.integer.ByteType) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 9 with DiamondShape

use of net.imglib2.algorithm.neighborhood.DiamondShape in project imagej-ops by imagej.

the class ErosionTest method testListErode.

// @Test
public void testListErode() {
    final List<Shape> shapes = new ArrayList<>();
    shapes.add(new DiamondShape(1));
    shapes.add(new DiamondShape(1));
    shapes.add(new RectangleShape(1, false));
    shapes.add(new HorizontalLineShape(2, 1, false));
    final Img<ByteType> out2 = in.copy();
    Erosion.erode(Views.extendValue(in, new ByteType((byte) -128)), out2, shapes, 1);
    @SuppressWarnings("unchecked") final IterableInterval<ByteType> out1 = (IterableInterval<ByteType>) ops.run(ListErode.class, IterableInterval.class, in, shapes, false);
    assertIterationsEqual(out1, out2);
}
Also used : DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ArrayList(java.util.ArrayList) IterableInterval(net.imglib2.IterableInterval) ByteType(net.imglib2.type.numeric.integer.ByteType) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape)

Example 10 with DiamondShape

use of net.imglib2.algorithm.neighborhood.DiamondShape in project imagej-ops by imagej.

the class OpeningTest method testSingleOpen.

@Test
public void testSingleOpen() {
    final Shape shape = new DiamondShape(1);
    final List<Shape> shapes = Arrays.asList(shape);
    @SuppressWarnings("unchecked") final Img<ByteType> out1 = (Img<ByteType>) ops.run(ListOpen.class, Img.class, in, shapes);
    final Img<ByteType> out2 = Opening.open(in, shape, 1);
    assertIterationsEqual(out2, out1);
}
Also used : Img(net.imglib2.img.Img) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Aggregations

DiamondShape (net.imglib2.algorithm.neighborhood.DiamondShape)23 RectangleShape (net.imglib2.algorithm.neighborhood.RectangleShape)21 AbstractOpTest (net.imagej.ops.AbstractOpTest)20 Shape (net.imglib2.algorithm.neighborhood.Shape)20 Test (org.junit.Test)20 HorizontalLineShape (net.imglib2.algorithm.neighborhood.HorizontalLineShape)18 ByteType (net.imglib2.type.numeric.integer.ByteType)17 ArrayList (java.util.ArrayList)10 Img (net.imglib2.img.Img)10 IterableInterval (net.imglib2.IterableInterval)9 BitType (net.imglib2.type.logic.BitType)5 RandomAccessibleInterval (net.imglib2.RandomAccessibleInterval)3 Neighborhood (net.imglib2.algorithm.neighborhood.Neighborhood)2 LabelingType (net.imglib2.roi.labeling.LabelingType)2 IntType (net.imglib2.type.numeric.integer.IntType)2 ExtendedRandomAccessibleInterval (net.imglib2.view.ExtendedRandomAccessibleInterval)2 Collections (java.util.Collections)1 Comparator (java.util.Comparator)1 List (java.util.List)1 Map (java.util.Map)1