Examples with EquationParserImpl org.cytoscape.equations.internal.EquationParserImpl used on opensource projects

Example 6 with EquationParserImpl

use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.

the class TestCyNetworkFactory method mockCyServiceRegistrar.

private static CyServiceRegistrar mockCyServiceRegistrar(CyEventHelper deh) {
    CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    CyNetworkNaming namingUtil = mock(CyNetworkNaming.class);
    EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    final Interpreter interpreter = new InterpreterImpl();
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(deh);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    return serviceRegistrar;
}

Example 7 with EquationParserImpl

use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.

the class TestCyNetworkFactory method setUp.

@Before
public void setUp() {
    MockitoAnnotations.initMocks(this);
    eh = new DummyCyEventHelper(false);
    Interpreter interpreter = new InterpreterImpl();
    EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eh);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    netTblMgr = new CyNetworkTableManagerImpl();
    netMgr = new CyNetworkManagerImpl(serviceRegistrar);
    tblMgr = new CyTableManagerImpl(netTblMgr, netMgr, serviceRegistrar);
    tblFactory = new CyTableFactoryImpl(eh, serviceRegistrar);
    netFactory = new CyNetworkFactoryImpl(eh, tblMgr, netTblMgr, tblFactory, serviceRegistrar);
}

Example 8 with EquationParserImpl

use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.

the class TableTestSupportTest method setUp.

@Before
public void setUp() {
    eventHelper = support.getDummyCyEventHelper();
    EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    table = factory.createTable(Integer.toString(rand.nextInt(10000)), CyIdentifiable.SUID, Long.class, false, true);
    table2 = factory.createTable(Integer.toString(rand.nextInt(10000)), CyIdentifiable.SUID, Long.class, false, true);
    attrs = table.getRow(1l);
    CyTableManagerImpl tblMgr = new CyTableManagerImpl(new CyNetworkTableManagerImpl(), new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
    tblMgr.addTable(table);
    ((CyTableImpl) table).handleEvent(new TableAddedEvent(tblMgr, table));
    tblMgr.addTable(table2);
    ((CyTableImpl) table2).handleEvent(new TableAddedEvent(tblMgr, table2));
}

Example 9 with EquationParserImpl

use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.

the class EquationTest method setUp.

@Before
public void setUp() {
    support = new TableTestSupport();
    eventHelper = new DummyCyEventHelper();
    serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    parser = new EquationParserImpl(serviceRegistrar);
}

Example 10 with EquationParserImpl

use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.

the class InDegreeTest method test.

@Test
public void test() {
    final EquationParserImpl parser = new EquationParserImpl(serviceRegistrar);
    final EquationCompilerImpl compiler = new EquationCompilerImpl(parser);
    parser.registerFunctionInternal(new InDegree(serviceRegistrar));
    final Map<String, Class<?>> variableNameToTypeMap = new HashMap<String, Class<?>>();
    if (!compiler.compile("=INDEGREE(101)", variableNameToTypeMap))
        fail(compiler.getLastErrorMsg());
    final Equation equation = compiler.getEquation();
    final Interpreter interpreter = new InterpreterImpl();
    final Map<String, IdentDescriptor> variableNameToDescriptorMap = new HashMap<String, IdentDescriptor>();
    assertEquals("Equation evaluation returned an unexpected result!", 3L, interpreter.execute(equation, variableNameToDescriptorMap));
}