use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.
the class SourceIDTest method test.
@Test
public void test() {
final EquationParserImpl parser = new EquationParserImpl(serviceRegistrar);
final EquationCompilerImpl compiler = new EquationCompilerImpl(parser);
parser.registerFunctionInternal(new SourceID(serviceRegistrar));
final Map<String, Class<?>> variableNameToTypeMap = new HashMap<String, Class<?>>();
if (!compiler.compile("=SOURCEID(11)", variableNameToTypeMap))
fail(compiler.getLastErrorMsg());
final Equation equation = compiler.getEquation();
final Interpreter interpreter = new InterpreterImpl();
final Map<String, IdentDescriptor> variableNameToDescriptorMap = new HashMap<String, IdentDescriptor>();
assertEquals("Equation evaluation returned an unexpected result!", 101L, interpreter.execute(equation, variableNameToDescriptorMap));
}
use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.
the class InterpreterTest method init.
@Before
public void init() {
eventHelper = new DummyCyEventHelper();
serviceRegistrar = mock(CyServiceRegistrar.class);
when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
parser = new EquationParserImpl(serviceRegistrar);
compiler = new EquationCompilerImpl(parser);
interpreter = new InterpreterImpl();
}
use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.
the class CySubNetworkCyTableManagerTest method setUp.
@Before
public void setUp() {
final CyEventHelper eh = new DummyCyEventHelper();
final CyNetworkNaming namingUtil = mock(CyNetworkNaming.class);
final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
final EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
final Interpreter interpreter = new InterpreterImpl();
when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eh);
when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
networkTableMgr = new CyNetworkTableManagerImpl();
networkManager = new CyNetworkManagerImpl(serviceRegistrar);
mgr = new CyTableManagerImpl(networkTableMgr, networkManager, serviceRegistrar);
CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(eh, serviceRegistrar);
CyRootNetworkImpl baseNet = new CyRootNetworkImpl(eh, (CyTableManagerImpl) mgr, networkTableMgr, tableFactory, serviceRegistrar, true, SavePolicy.DO_NOT_SAVE);
// This is a different subnetwork and not "baseNetwork" in ArrayGraph.
goodNetwork = baseNet.addSubNetwork();
globalTable = tableFactory.createTable("test table", CyIdentifiable.SUID, Long.class, true, true);
networkManager.addNetwork(goodNetwork);
assertNotNull(globalTable);
assertNotNull(goodNetwork);
assertEquals(1, networkManager.getNetworkSet().size());
}
use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.
the class CyTableTest method setUp.
@Before
public void setUp() {
eventHelper = new DummyCyEventHelper();
compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
final Interpreter interpreter = new InterpreterImpl();
when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
table = new CyTableImpl("homer", CyIdentifiable.SUID, Long.class, false, true, SavePolicy.SESSION_FILE, eventHelper, ColumnDataFactory.createDefaultFactory(), interpreter, 1000);
attrs = table.getRow(1L);
table2 = new CyTableImpl("marge", CyIdentifiable.SUID, Long.class, false, true, SavePolicy.SESSION_FILE, eventHelper, ColumnDataFactory.createDefaultFactory(), interpreter, 1000);
CyTableManagerImpl tblMgr = new CyTableManagerImpl(new CyNetworkTableManagerImpl(), new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
tblMgr.addTable(table);
((CyTableImpl) table).handleEvent(new TableAddedEvent(tblMgr, table));
tblMgr.addTable(table2);
((CyTableImpl) table2).handleEvent(new TableAddedEvent(tblMgr, table2));
}
use of org.cytoscape.equations.internal.EquationParserImpl in project cytoscape-impl by cytoscape.
the class DegreeTest method test.
@Test
public void test() {
final EquationParserImpl parser = new EquationParserImpl(serviceRegistrar);
final EquationCompilerImpl compiler = new EquationCompilerImpl(parser);
parser.registerFunctionInternal(new Degree(serviceRegistrar));
final Map<String, Class<?>> variableNameToTypeMap = new HashMap<String, Class<?>>();
if (!compiler.compile("=DEGREE(101)", variableNameToTypeMap))
fail(compiler.getLastErrorMsg());
final Equation equation = compiler.getEquation();
final Interpreter interpreter = new InterpreterImpl();
final Map<String, IdentDescriptor> variableNameToDescriptorMap = new HashMap<String, IdentDescriptor>();
assertEquals("Equation evaluation returned an unexpected result!", 3L, interpreter.execute(equation, variableNameToDescriptorMap));
}
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