use of org.cytoscape.model.internal.CyRootNetworkImpl in project cytoscape-impl by cytoscape.
the class CySubNetworkCyTableManagerTest method setUp.
@Before
public void setUp() {
final CyEventHelper eh = new DummyCyEventHelper();
final CyNetworkNaming namingUtil = mock(CyNetworkNaming.class);
final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
final EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
final Interpreter interpreter = new InterpreterImpl();
when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eh);
when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
networkTableMgr = new CyNetworkTableManagerImpl();
networkManager = new CyNetworkManagerImpl(serviceRegistrar);
mgr = new CyTableManagerImpl(networkTableMgr, networkManager, serviceRegistrar);
CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(eh, serviceRegistrar);
CyRootNetworkImpl baseNet = new CyRootNetworkImpl(eh, (CyTableManagerImpl) mgr, networkTableMgr, tableFactory, serviceRegistrar, true, SavePolicy.DO_NOT_SAVE);
// This is a different subnetwork and not "baseNetwork" in ArrayGraph.
goodNetwork = baseNet.addSubNetwork();
globalTable = tableFactory.createTable("test table", CyIdentifiable.SUID, Long.class, true, true);
networkManager.addNetwork(goodNetwork);
assertNotNull(globalTable);
assertNotNull(goodNetwork);
assertEquals(1, networkManager.getNetworkSet().size());
}
use of org.cytoscape.model.internal.CyRootNetworkImpl in project cytoscape-impl by cytoscape.
the class TestCyNetworkFactory method getPublicRootInstance.
public static CyRootNetwork getPublicRootInstance(DummyCyEventHelper deh, SavePolicy policy) {
CyServiceRegistrar serviceRegistrar = mockCyServiceRegistrar(deh);
final CyNetworkTableManagerImpl ntm = new CyNetworkTableManagerImpl();
final CyTableManagerImpl tm = new CyTableManagerImpl(ntm, new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
final CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(deh, serviceRegistrar);
return new CyRootNetworkImpl(deh, tm, ntm, tableFactory, serviceRegistrar, true, policy);
}
use of org.cytoscape.model.internal.CyRootNetworkImpl in project cytoscape-impl by cytoscape.
the class TestCyNetworkFactory method getPrivateRootInstance.
public static CyRootNetwork getPrivateRootInstance(SavePolicy policy) {
DummyCyEventHelper deh = new DummyCyEventHelper();
CyServiceRegistrar serviceRegistrar = mockCyServiceRegistrar(deh);
CyNetworkTableManagerImpl ntm = new CyNetworkTableManagerImpl();
CyTableManagerImpl tm = new CyTableManagerImpl(ntm, new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
CyRootNetworkImpl ar = new CyRootNetworkImpl(deh, tm, ntm, new CyTableFactoryImpl(deh, serviceRegistrar), serviceRegistrar, false, policy);
return ar;
}
use of org.cytoscape.model.internal.CyRootNetworkImpl in project cytoscape-impl by cytoscape.
the class CyTableManagerTest method setUp.
@Before
public void setUp() {
final Interpreter interpreter = new InterpreterImpl();
when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
networkTableMgr = new CyNetworkTableManagerImpl();
networkManager = new CyNetworkManagerImpl(serviceRegistrar);
mgr = new CyTableManagerImpl(networkTableMgr, networkManager, serviceRegistrar);
assertNotNull(mgr);
assertEquals(0, mgr.getAllTables(true).size());
final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
final CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(eventHelper, serviceRegistrar);
goodNetwork = new CyRootNetworkImpl(eventHelper, (CyTableManagerImpl) mgr, networkTableMgr, tableFactory, serviceRegistrar, true, SavePolicy.DO_NOT_SAVE).getBaseNetwork();
networkManager.addNetwork(goodNetwork);
globalTable = tableFactory.createTable("test table", CyIdentifiable.SUID, Long.class, true, true);
assertNotNull(globalTable);
assertNotNull(goodNetwork);
assertEquals(1, networkManager.getNetworkSet().size());
}
Aggregations