Search in sources :

Example 1 with CyNetworkTableManagerImpl

use of org.cytoscape.model.internal.CyNetworkTableManagerImpl in project cytoscape-impl by cytoscape.

the class CySubNetworkCyTableManagerTest method setUp.

@Before
public void setUp() {
    final CyEventHelper eh = new DummyCyEventHelper();
    final CyNetworkNaming namingUtil = mock(CyNetworkNaming.class);
    final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    final EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    final Interpreter interpreter = new InterpreterImpl();
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eh);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    networkTableMgr = new CyNetworkTableManagerImpl();
    networkManager = new CyNetworkManagerImpl(serviceRegistrar);
    mgr = new CyTableManagerImpl(networkTableMgr, networkManager, serviceRegistrar);
    CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(eh, serviceRegistrar);
    CyRootNetworkImpl baseNet = new CyRootNetworkImpl(eh, (CyTableManagerImpl) mgr, networkTableMgr, tableFactory, serviceRegistrar, true, SavePolicy.DO_NOT_SAVE);
    // This is a different subnetwork and not "baseNetwork" in ArrayGraph.
    goodNetwork = baseNet.addSubNetwork();
    globalTable = tableFactory.createTable("test table", CyIdentifiable.SUID, Long.class, true, true);
    networkManager.addNetwork(goodNetwork);
    assertNotNull(globalTable);
    assertNotNull(goodNetwork);
    assertEquals(1, networkManager.getNetworkSet().size());
}
Also used : DummyCyEventHelper(org.cytoscape.event.DummyCyEventHelper) CyEventHelper(org.cytoscape.event.CyEventHelper) EquationCompilerImpl(org.cytoscape.equations.internal.EquationCompilerImpl) Interpreter(org.cytoscape.equations.Interpreter) CyNetworkManagerImpl(org.cytoscape.model.internal.CyNetworkManagerImpl) InterpreterImpl(org.cytoscape.equations.internal.interpreter.InterpreterImpl) CyTableManagerImpl(org.cytoscape.model.internal.CyTableManagerImpl) CyServiceRegistrar(org.cytoscape.service.util.CyServiceRegistrar) EquationParserImpl(org.cytoscape.equations.internal.EquationParserImpl) CyTableFactoryImpl(org.cytoscape.model.internal.CyTableFactoryImpl) CyNetworkTableManagerImpl(org.cytoscape.model.internal.CyNetworkTableManagerImpl) CyRootNetworkImpl(org.cytoscape.model.internal.CyRootNetworkImpl) CyNetworkNaming(org.cytoscape.session.CyNetworkNaming) DummyCyEventHelper(org.cytoscape.event.DummyCyEventHelper) EquationCompiler(org.cytoscape.equations.EquationCompiler) Before(org.junit.Before)

Example 2 with CyNetworkTableManagerImpl

use of org.cytoscape.model.internal.CyNetworkTableManagerImpl in project cytoscape-impl by cytoscape.

the class CyTableTest method setUp.

@Before
public void setUp() {
    eventHelper = new DummyCyEventHelper();
    compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    final Interpreter interpreter = new InterpreterImpl();
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    table = new CyTableImpl("homer", CyIdentifiable.SUID, Long.class, false, true, SavePolicy.SESSION_FILE, eventHelper, ColumnDataFactory.createDefaultFactory(), interpreter, 1000);
    attrs = table.getRow(1L);
    table2 = new CyTableImpl("marge", CyIdentifiable.SUID, Long.class, false, true, SavePolicy.SESSION_FILE, eventHelper, ColumnDataFactory.createDefaultFactory(), interpreter, 1000);
    CyTableManagerImpl tblMgr = new CyTableManagerImpl(new CyNetworkTableManagerImpl(), new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
    tblMgr.addTable(table);
    ((CyTableImpl) table).handleEvent(new TableAddedEvent(tblMgr, table));
    tblMgr.addTable(table2);
    ((CyTableImpl) table2).handleEvent(new TableAddedEvent(tblMgr, table2));
}
Also used : EquationParserImpl(org.cytoscape.equations.internal.EquationParserImpl) EquationCompilerImpl(org.cytoscape.equations.internal.EquationCompilerImpl) Interpreter(org.cytoscape.equations.Interpreter) CyNetworkManagerImpl(org.cytoscape.model.internal.CyNetworkManagerImpl) CyNetworkTableManagerImpl(org.cytoscape.model.internal.CyNetworkTableManagerImpl) TableAddedEvent(org.cytoscape.model.events.TableAddedEvent) DummyCyEventHelper(org.cytoscape.event.DummyCyEventHelper) InterpreterImpl(org.cytoscape.equations.internal.interpreter.InterpreterImpl) CyTableManagerImpl(org.cytoscape.model.internal.CyTableManagerImpl) CyTableImpl(org.cytoscape.model.internal.CyTableImpl) Before(org.junit.Before)

Example 3 with CyNetworkTableManagerImpl

use of org.cytoscape.model.internal.CyNetworkTableManagerImpl in project cytoscape-impl by cytoscape.

the class TestCyNetworkFactory method getPublicRootInstance.

public static CyRootNetwork getPublicRootInstance(DummyCyEventHelper deh, SavePolicy policy) {
    CyServiceRegistrar serviceRegistrar = mockCyServiceRegistrar(deh);
    final CyNetworkTableManagerImpl ntm = new CyNetworkTableManagerImpl();
    final CyTableManagerImpl tm = new CyTableManagerImpl(ntm, new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
    final CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(deh, serviceRegistrar);
    return new CyRootNetworkImpl(deh, tm, ntm, tableFactory, serviceRegistrar, true, policy);
}
Also used : CyTableFactoryImpl(org.cytoscape.model.internal.CyTableFactoryImpl) CyNetworkManagerImpl(org.cytoscape.model.internal.CyNetworkManagerImpl) CyNetworkTableManagerImpl(org.cytoscape.model.internal.CyNetworkTableManagerImpl) CyRootNetworkImpl(org.cytoscape.model.internal.CyRootNetworkImpl) CyTableManagerImpl(org.cytoscape.model.internal.CyTableManagerImpl) CyServiceRegistrar(org.cytoscape.service.util.CyServiceRegistrar)

Example 4 with CyNetworkTableManagerImpl

use of org.cytoscape.model.internal.CyNetworkTableManagerImpl in project cytoscape-impl by cytoscape.

the class CyNetworkTableManagerTest method setUp.

@Before
public void setUp() {
    super.setUp();
    final Interpreter interpreter = new InterpreterImpl();
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eh);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    this.mgr = new CyNetworkTableManagerImpl();
    this.networkManager = new CyNetworkManagerImpl(serviceRegistrar);
    this.tableManager = new CyTableManagerImpl(mgr, networkManager, serviceRegistrar);
    this.tableFactory = new CyTableFactoryImpl(eh, serviceRegistrar);
    this.networkFactory = new CyNetworkFactoryImpl(eh, tableManager, mgr, tableFactory, serviceRegistrar);
    goodNetwork = networkFactory.createNetwork();
}
Also used : CyTableFactoryImpl(org.cytoscape.model.internal.CyTableFactoryImpl) Interpreter(org.cytoscape.equations.Interpreter) CyNetworkManagerImpl(org.cytoscape.model.internal.CyNetworkManagerImpl) CyNetworkTableManagerImpl(org.cytoscape.model.internal.CyNetworkTableManagerImpl) InterpreterImpl(org.cytoscape.equations.internal.interpreter.InterpreterImpl) CyNetworkFactoryImpl(org.cytoscape.model.internal.CyNetworkFactoryImpl) CyTableManagerImpl(org.cytoscape.model.internal.CyTableManagerImpl) Before(org.junit.Before)

Example 5 with CyNetworkTableManagerImpl

use of org.cytoscape.model.internal.CyNetworkTableManagerImpl in project cytoscape-impl by cytoscape.

the class TestCyNetworkFactory method setUp.

@Before
public void setUp() {
    MockitoAnnotations.initMocks(this);
    eh = new DummyCyEventHelper(false);
    Interpreter interpreter = new InterpreterImpl();
    EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eh);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    netTblMgr = new CyNetworkTableManagerImpl();
    netMgr = new CyNetworkManagerImpl(serviceRegistrar);
    tblMgr = new CyTableManagerImpl(netTblMgr, netMgr, serviceRegistrar);
    tblFactory = new CyTableFactoryImpl(eh, serviceRegistrar);
    netFactory = new CyNetworkFactoryImpl(eh, tblMgr, netTblMgr, tblFactory, serviceRegistrar);
}
Also used : EquationParserImpl(org.cytoscape.equations.internal.EquationParserImpl) CyTableFactoryImpl(org.cytoscape.model.internal.CyTableFactoryImpl) Interpreter(org.cytoscape.equations.Interpreter) EquationCompilerImpl(org.cytoscape.equations.internal.EquationCompilerImpl) CyNetworkManagerImpl(org.cytoscape.model.internal.CyNetworkManagerImpl) CyNetworkTableManagerImpl(org.cytoscape.model.internal.CyNetworkTableManagerImpl) DummyCyEventHelper(org.cytoscape.event.DummyCyEventHelper) InterpreterImpl(org.cytoscape.equations.internal.interpreter.InterpreterImpl) CyNetworkFactoryImpl(org.cytoscape.model.internal.CyNetworkFactoryImpl) EquationCompiler(org.cytoscape.equations.EquationCompiler) CyTableManagerImpl(org.cytoscape.model.internal.CyTableManagerImpl) Before(org.junit.Before)

Aggregations

CyNetworkTableManagerImpl (org.cytoscape.model.internal.CyNetworkTableManagerImpl)9 CyNetworkManagerImpl (org.cytoscape.model.internal.CyNetworkManagerImpl)8 CyTableManagerImpl (org.cytoscape.model.internal.CyTableManagerImpl)8 CyTableFactoryImpl (org.cytoscape.model.internal.CyTableFactoryImpl)6 Before (org.junit.Before)6 Interpreter (org.cytoscape.equations.Interpreter)5 InterpreterImpl (org.cytoscape.equations.internal.interpreter.InterpreterImpl)5 EquationCompilerImpl (org.cytoscape.equations.internal.EquationCompilerImpl)4 EquationParserImpl (org.cytoscape.equations.internal.EquationParserImpl)4 DummyCyEventHelper (org.cytoscape.event.DummyCyEventHelper)4 CyRootNetworkImpl (org.cytoscape.model.internal.CyRootNetworkImpl)4 CyServiceRegistrar (org.cytoscape.service.util.CyServiceRegistrar)4 EquationCompiler (org.cytoscape.equations.EquationCompiler)3 TableAddedEvent (org.cytoscape.model.events.TableAddedEvent)2 CyNetworkFactoryImpl (org.cytoscape.model.internal.CyNetworkFactoryImpl)2 CyTableImpl (org.cytoscape.model.internal.CyTableImpl)2 CyEventHelper (org.cytoscape.event.CyEventHelper)1 CyNetworkNaming (org.cytoscape.session.CyNetworkNaming)1