Examples with ElementDefn org.hl7.fhir.definitions.model.ElementDefn used on opensource projects

Example 16 with ElementDefn

use of org.hl7.fhir.definitions.model.ElementDefn in project kindling by HL7.

the class PageProcessor method genDataTypeMappings.

private String genDataTypeMappings(String name) throws Exception {
    if (name.equals("primitives")) {
        StringBuilder b = new StringBuilder();
        b.append("<table class=\"grid\">\r\n");
        b.append("<tr>");
        b.append("<td><b>Data Type</b></td>");
        b.append("<td><b>V2</b></td>");
        b.append("<td><b>RIM</b></td>");
        b.append("</tr>");
        List<String> names = new ArrayList<String>();
        names.addAll(definitions.getPrimitives().keySet());
        Collections.sort(names);
        for (String n : names) {
            DefinedCode dc = definitions.getPrimitives().get(n);
            if (dc instanceof PrimitiveType) {
                PrimitiveType pt = (PrimitiveType) dc;
                b.append("<tr>");
                b.append("<td>").append(n).append("</td>");
                b.append("<td>").append(pt.getV2()).append("</td>");
                b.append("<td>").append(pt.getV3()).append("</td>");
                b.append("</tr>");
            }
        }
        b.append("</table>\r\n");
        return b.toString();
    } else {
        List<ElementDefn> list = new ArrayList<ElementDefn>();
        // list.addAll(definitions.getStructures().values());
        // list.addAll(definitions.getTypes().values());
        // list.addAll(definitions.getInfrastructure().values());
        list.add(definitions.getElementDefn(name));
        MappingsGenerator maps = new MappingsGenerator(definitions);
        maps.generate(list);
        return maps.getMappings();
    }
}

Example 17 with ElementDefn

use of org.hl7.fhir.definitions.model.ElementDefn in project kindling by HL7.

the class OldSpreadsheetParser method parseProfileSheet.

private ConstraintStructure parseProfileSheet(Definitions definitions, Profile ap, String n, List<String> namedSheets, boolean published, String usage, List<ValidationMessage> issues, WorkGroup wg, String fmm) throws Exception {
    Sheet sheet;
    ResourceDefn resource = new ResourceDefn();
    sheet = loadSheet(n + "-Inv");
    Map<String, Invariant> invariants = null;
    if (sheet != null) {
        invariants = readInvariants(sheet, n, n + "-Inv");
    } else {
        invariants = new HashMap<String, Invariant>();
    }
    sheet = loadSheet(n);
    if (sheet == null)
        throw new Exception("The StructureDefinition referred to a tab by the name of '" + n + "', but no tab by the name could be found");
    for (int row = 0; row < sheet.rows.size(); row++) {
        ElementDefn e = processLine(resource, sheet, row, invariants, true, ap, row == 0);
        if (e != null)
            for (TypeRef t : e.getTypes()) {
                if (t.getProfile() != null && !t.getName().equals("Extension") && t.getProfile().startsWith("#")) {
                    if (!namedSheets.contains(t.getProfile().substring(1)))
                        namedSheets.add(t.getProfile().substring(1));
                }
            }
    }
    sheet = loadSheet(n + "-Extensions");
    if (sheet != null) {
        int row = 0;
        while (row < sheet.rows.size()) {
            if (sheet.getColumn(row, "Code").startsWith("!"))
                row++;
            else
                row = processExtension(resource.getRoot().getElementByName(definitions, "extensions", true, false), sheet, row, definitions, ap.metadata("extension.uri"), ap, issues, invariants, wg);
        }
    }
    sheet = loadSheet(n + "-Search");
    if (sheet != null) {
        readSearchParams(resource, sheet, true);
    }
    if (invariants != null) {
        for (Invariant inv : invariants.values()) {
            if (Utilities.noString(inv.getContext()))
                throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " has no context");
            else {
                ElementDefn ed = findContext(resource.getRoot(), inv.getContext(), "Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " Context");
                // TODO: Need to resolve context based on element name, not just path
                if (ed.getName().endsWith("[x]") && !inv.getContext().endsWith("[x]"))
                    inv.setFixedName(inv.getContext().substring(inv.getContext().lastIndexOf(".") + 1));
                ed.getInvariants().put(inv.getId(), inv);
                if (Utilities.noString(inv.getXpath())) {
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") has no XPath statement");
                } else if (inv.getXpath().contains("\""))
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") contains a \" character");
            // if (Utilities.noString(inv.getExpression()))
            // throw new Exception("Type "+resource.getRoot().getName()+" Invariant "+inv.getId()+" ("+inv.getEnglish()+") has no Expression statement (in FHIRPath format)");
            }
        }
    }
    resource.getRoot().setProfileName(n);
    if (n.toLowerCase().equals(ap.getId()))
        throw new Exception("Duplicate Profile Name: Package id " + ap.getId() + " and profile id " + n.toLowerCase() + " are the same");
    if (profileIds.containsKey(n.toLowerCase()))
        throw new Exception("Duplicate Profile Name: " + n.toLowerCase() + " in " + ap.getId() + ", already registered in " + profileIds.get(n.toLowerCase()).getOwner());
    ConstraintStructure p = new ConstraintStructure(n.toLowerCase(), resource.getRoot().getProfileName(), resource, ig != null ? ig : definitions.getUsageIG(usage, "Parsing " + name), wg, fmm, Utilities.existsInList(ap.metadata("Experimental"), "y", "Y", "true", "TRUE", "1"));
    p.setOwner(ap.getId());
    profileIds.put(n.toLowerCase(), p);
    return p;
}

Example 18 with ElementDefn

use of org.hl7.fhir.definitions.model.ElementDefn in project kindling by HL7.

the class OldSpreadsheetParser method resolveElementReferences.

private void resolveElementReferences(ResourceDefn parent, ElementDefn root) throws Exception {
    for (TypeRef ref : root.getTypes()) {
        if (ref.isElementReference()) {
            ElementDefn referredElement = parent.getRoot().getElementByName(definitions, ref.getName().substring(1), true, false, null);
            if (referredElement == null)
                throw new Exception("Element reference " + ref.getName() + " cannot be found in type " + parent.getName());
            if (referredElement.getDeclaredTypeName() == null)
                throw new Exception("Element reference " + ref.getName() + " in " + parent.getName() + " refers to an anonymous group of elements. Please specify names with the '=<name>' construct in the typename column.");
            ref.setResolvedTypeName(referredElement.getDeclaredTypeName());
        }
    }
    for (ElementDefn element : root.getElements()) {
        resolveElementReferences(parent, element);
    }
}

Example 19 with ElementDefn

use of org.hl7.fhir.definitions.model.ElementDefn in project kindling by HL7.

the class OldSpreadsheetParser method parseCommonTypeColumns.

private ResourceDefn parseCommonTypeColumns(boolean isResource, boolean isTemplate) throws Exception {
    ResourceDefn resource = new ResourceDefn();
    resource.setInterface(isTemplate);
    Sheet sheet = loadSheet("Bindings");
    if (sheet != null)
        readBindings(sheet);
    sheet = loadSheet("Invariants");
    Map<String, Invariant> invariants = null;
    if (sheet != null)
        invariants = readInvariants(sheet, title, "Invariants");
    sheet = loadSheet("Data Elements");
    if (sheet == null)
        throw new Exception("No Sheet found for Data Elements");
    for (int row = 0; row < sheet.rows.size(); row++) {
        processLine(resource, sheet, row, invariants, false, null, row == 0);
    }
    // default...
    StandardsStatus ss = StandardsStatus.TRIAL_USE;
    String s = ini.getStringProperty("normative", resource.getName());
    if (!Utilities.noString(s))
        ss = StandardsStatus.NORMATIVE;
    resource.setStatus(ss);
    resource.setRequirements(resource.getRoot().getRequirements());
    resource.addHints(checkIgnoredColumns(sheet));
    if (template != null) {
        resource.setTemplate(template.getRoot());
        copySearchParameters(resource);
        copyInvariants(resource);
        template = null;
    }
    parseMetadata(resource);
    if (invariants != null) {
        for (Invariant inv : invariants.values()) {
            if (Utilities.noString(inv.getContext()))
                throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " has no context");
            else {
                ElementDefn ed = findContext(resource.getRoot(), inv.getContext(), "Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " Context");
                if (ed.getName().endsWith("[x]") && !inv.getContext().endsWith("[x]"))
                    inv.setFixedName(inv.getContext().substring(inv.getContext().lastIndexOf(".") + 1));
                ed.getInvariants().put(inv.getId(), inv);
                if (Utilities.noString(inv.getXpath())) {
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") has no XPath statement");
                } else if (inv.getXpath().contains("\""))
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") contains a \" character");
                if (Utilities.noString(inv.getExpression())) {
                // This has been disabled for now, per Lloyd McKenzie's request via Skype - jamesagnew
                // throw new Exception("Type "+resource.getRoot().getName()+" Invariant "+inv.getId()+" ("+inv.getEnglish()+") has no Expression statement (in FHIRPath format)");
                } else {
                    fpUsages.add(new FHIRPathUsage(inv.getContext(), isResource ? resource.getName() : "DomainResource", inv.getContext(), null, inv.getExpression(), inv.getXpath()));
                }
            }
        }
    }
    // EK: Future types. But those won't get there.
    if (bindings != null)
        resource.getRoot().getNestedBindings().putAll(bindings);
    scanNestedTypes(resource, resource.getRoot(), resource.getName());
    resolveElementReferences(resource, resource.getRoot());
    resource.getRoot().setAbstractType(isAbstract);
    return resource;
}

Example 20 with ElementDefn

use of org.hl7.fhir.definitions.model.ElementDefn in project kindling by HL7.

the class OldSpreadsheetParser method scanNestedTypes.

private void scanNestedTypes(ResourceDefn parent, ElementDefn root, String parentName) throws Exception {
    for (ElementDefn element : root.getElements()) {
        if (element.hasNestedElements()) {
            String nestedTypeName;
            ElementDefn newCompositeType = new ElementDefn();
            // generated name for this nested type
            if (element.typeCode().startsWith("=")) {
                if (isProfile)
                    throw new Exception("Cannot use '=' types in profiles on " + parentName);
                element.setStatedType(element.typeCode().substring(1));
                nestedTypeName = element.typeCode().substring(1);
            } else {
                nestedTypeName = parentName + Utilities.capitalize(element.getName());
            }
            newCompositeType.setAnonymousTypedGroup(true);
            // Add Component to the actually generated name to avoid
            // confusing between the element name and the element's type
            newCompositeType.setName(nestedTypeName + "Component");
            newCompositeType.setDefinition("A nested type in " + parent.getName() + ": " + element.getDefinition());
            newCompositeType.getElements().addAll(element.getElements());
            if (parent.getRoot().getNestedTypes().containsKey(nestedTypeName))
                throw new Exception("Nested type " + nestedTypeName + " already exist in resource " + parent.getName());
            parent.getRoot().getNestedTypes().put(nestedTypeName, newCompositeType);
            // Clear out the name of the local type, so old code
            // will not see a change.
            element.getTypes().clear();
            element.setDeclaredTypeName(newCompositeType.getName());
            scanNestedTypes(parent, element, nestedTypeName);
        }
    }
}