Examples with TypeRef org.hl7.fhir.definitions.model.TypeRef used on opensource projects

Example 6 with TypeRef

use of org.hl7.fhir.definitions.model.TypeRef in project kindling by HL7.

the class SourceParser method checkConditions.

public void checkConditions(List<String> errors, Map<String, Long> dates) throws Exception {
    Utilities.checkFolder(srcDir, errors);
    Utilities.checkFolder(termDir, errors);
    Utilities.checkFolder(imgDir, errors);
    this.dates = dates;
    checkFile("required", termDir, "bindings.xml", errors, "all");
    checkFile("required", dtDir, "primitives.xml", errors, "all");
    for (String n : ini.getPropertyNames("types")) if (ini.getStringProperty("types", n).equals("")) {
        TypeRef t = new TypeParser(version.toString()).parse(n, false, null, context, true).get(0);
        checkFile("type definition", dtDir, t.getName().toLowerCase() + ".xml", errors, "all");
    }
    String[] shared = ini.getPropertyNames("shared");
    if (shared != null)
        for (String n : shared) checkFile("shared structure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
    for (String n : ini.getPropertyNames("infrastructure")) checkFile("infrastructure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
    for (String n : ini.getPropertyNames("resources")) {
        if (!new File(srcDir + n).exists())
            errors.add("unable to find folder for resource " + n);
        else {
            for (String fn : new File(srcDir + n + File.separatorChar).list()) checkFile("source", srcDir + n + File.separatorChar, fn, errors, n);
        }
    }
    for (String n : ini.getPropertyNames("special-resources")) {
        // now iterate all the files in the directory checking data
        for (String fn : new File(srcDir + n + File.separatorChar).list()) checkFile("source", srcDir + n + File.separatorChar, fn, errors, n);
    }
}

Example 7 with TypeRef

use of org.hl7.fhir.definitions.model.TypeRef in project kindling by HL7.

the class SpreadSheetReloader method parseType.

private void parseType(ElementDefinition ed, String value, String hierarchy) throws Exception {
    ed.getType().clear();
    ed.setContentReferenceElement(null);
    if (ed.getPath().equals("Resource.id")) {
        ed.addType().setCode("http://hl7.org/fhirpath/System.String").addExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type", new UriType("id"));
    } else {
        if (Utilities.noString(value)) {
            if (ed.getPath().contains(".")) {
                ed.addType().setCode("BackboneElement");
            }
        } else if (value.startsWith("#")) {
            ed.setContentReference(value);
        } else {
            List<TypeRef> tl = new TypeParser(version).parse(value, false, null, context, false);
            for (TypeRef tr : tl) {
                TypeRefComponent t = ed.addType().setCode(tr.getName());
                if ("SimpleQuantity".equals(t.getCode())) {
                    t.setCode("Quantity");
                    t.addProfile("http://hl7.org/fhir/StructureDefinition/SimpleQuantity");
                }
                for (String p : tr.getParams()) {
                    if (p.equals("Definition")) {
                        t.addExtension(BuildExtensions.EXT_PATTERN, new CanonicalType("http://hl7.org/fhir/StructureDefinition/Definition"));
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/ActivityDefinition");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/EventDefinition");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/EvidenceVariable");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/Measure");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/OperationDefinition");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/PlanDefinition");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/Questionnaire");
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/SubscriptionTopic");
                    } else {
                        t.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + p);
                    }
                }
                if (Utilities.existsInList(tr.getName(), "canonical", "Reference") && !Utilities.noString(hierarchy)) {
                    t.addExtension(BuildExtensions.EXT_HIERARCHY, new BooleanType(Utilities.existsInList(hierarchy, "true", "True", "TRUE", "1", "y", "Y")));
                }
            }
        }
    }
}

Example 8 with TypeRef

use of org.hl7.fhir.definitions.model.TypeRef in project kindling by HL7.

the class PatternFinder method sortRefs.

private String sortRefs(ElementDefn focus) {
    List<String> s = new ArrayList<>();
    for (TypeRef t : focus.getTypes()) {
        if ("Reference".equals(t.getName())) {
            for (String p : t.getParams()) {
                if (definitions.hasLogicalModel(p))
                    s.addAll(definitions.getLogicalModel(p).getImplementations());
                else
                    s.add(p);
            }
        }
    }
    Collections.sort(s);
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    for (String n : s) b.append(n);
    return b.toString();
}

Example 9 with TypeRef

use of org.hl7.fhir.definitions.model.TypeRef in project kindling by HL7.

the class ResourceParser method parseResource.

private ResourceDefn parseResource(String t) throws FHIRFormatError, FileNotFoundException, IOException {
    StructureDefinition sd = (StructureDefinition) parseXml("structuredefinition-" + t + ".xml");
    sdList.put(sd.getUrl(), sd);
    sd.setVersion(version);
    ResourceDefn r = new ResourceDefn();
    r.setName(sd.getName());
    r.setEnteredInErrorStatus(ToolingExtensions.readStringExtension(sd, BuildExtensions.EXT_ENTERED_IN_ERROR_STATUS));
    r.setStatus(StandardsStatus.fromCode(ToolingExtensions.readStringExtension(sd, ToolingExtensions.EXT_STANDARDS_STATUS)));
    r.setAbstract(sd.getAbstract());
    r.setInterface(ToolingExtensions.readBoolExtension(sd, BuildExtensions.EXT_RESOURCE_INTERFACE));
    r.setWg(definitions.getWorkgroups().get(ToolingExtensions.readStringExtension(sd, ToolingExtensions.EXT_WORKGROUP)));
    r.setFmmLevel(ToolingExtensions.readStringExtension(sd, ToolingExtensions.EXT_FMM_LEVEL));
    r.setProposedOrder(ToolingExtensions.readStringExtension(sd, BuildExtensions.EXT_PROPOSED_ORDER));
    r.setSecurityCategorization(SecurityCategorization.fromCode(ToolingExtensions.readStringExtension(sd, "http://hl7.org/fhir/StructureDefinition/structuredefinition-security-category")));
    r.setRequirements(sd.getPurpose());
    r.setDefinition(sd.getDescription());
    if (sd.hasExtension(BuildExtensions.EXT_TEMPLATE)) {
        String tname = BuildExtensions.readStringExtension(sd, BuildExtensions.EXT_TEMPLATE);
        ResourceDefn template = definitions.getResourceByName(tname);
        r.setTemplate(template.getRoot());
    }
    // private long timestamp; only set in regenerator...?
    // todo:
    // private List<InheritedMapping> inheritedMappings = new ArrayList<InheritedMapping>();
    // private ElementDefn template;
    // private Map<String, PointSpec> layout = new HashMap<String, PointSpec>();
    ProfileUtilities pu = new ProfileUtilities(context, null, null);
    r.setRoot(parseTypeDefinition(pu, sd.getDifferential().getElementFirstRep(), sd));
    r.getRoot().setFmmLevel(r.getFmmLevel());
    r.getRoot().setRequirements(r.getRequirements());
    if (r.isAbstract()) {
        r.getRoot().setAbstractType(true);
    }
    if (sd.hasBaseDefinition()) {
        r.getRoot().getTypes().add(new TypeRef(sd.getBaseDefinition().replace("http://hl7.org/fhir/StructureDefinition/", "")));
    }
    return r;
}

Example 10 with TypeRef

use of org.hl7.fhir.definitions.model.TypeRef in project kindling by HL7.

the class ResourceParser method parseED.

private void parseED(ProfileUtilities pu, ElementDefn ed, ElementDefinition focus, StructureDefinition sd, String parentName) throws IOException {
    ed.setMinCardinality(focus.getMin());
    ed.setMaxCardinality("*".equals(focus.getMax()) ? Integer.MAX_VALUE : Integer.parseInt(focus.getMax()));
    ed.setIsModifier(focus.getIsModifier());
    ed.setModifierReason(focus.getIsModifierReason());
    ed.setMustSupport(focus.getMustSupport());
    ed.setSummaryItem(focus.getIsSummary());
    ed.setRegex(ToolingExtensions.readStringExtension(focus, ToolingExtensions.EXT_REGEX));
    ed.setXmlAttribute(focus.hasRepresentation(PropertyRepresentation.XMLATTR));
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_DIR)) {
        ed.setUmlDir(ToolingExtensions.readStringExtension(focus, BuildExtensions.EXT_UML_DIR));
    }
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_BREAK)) {
        ed.setUmlBreak(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_UML_BREAK));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_SVG)) {
        String svg = BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_SVG);
        if (svg.contains("w=")) {
            ed.setSvgWidth(Integer.parseInt(svg.substring(svg.indexOf("w=") + 2)));
            svg = svg.substring(0, svg.indexOf(";"));
        }
        ed.setSvgLeft(Integer.parseInt(svg.substring(0, svg.indexOf(","))));
        ed.setSvgTop(Integer.parseInt(svg.substring(svg.indexOf(",") + 1)));
    }
    ed.setName(tail(focus.getPath()));
    ed.setShortDefn(focus.getShort());
    ed.setDefinition(focus.getDefinition());
    ed.setRequirements(focus.getRequirements());
    ed.setComments(focus.getComment());
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_TODO)) {
        ed.setTodo(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_TODO));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES)) {
        ed.setCommitteeNotes(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_HINT)) {
        ed.setDisplayHint(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_HINT));
    }
    if (focus.hasExtension(BuildExtensions.EXT_NO_BINDING)) {
        ed.setNoBindingAllowed(focus.getExtensionString(BuildExtensions.EXT_NO_BINDING).equals("true"));
    }
    for (StringType t : focus.getAlias()) {
        ed.getAliases().add(t.getValue());
    }
    if (focus.hasMaxLength()) {
        ed.setMaxLength(Integer.toString(focus.getMaxLength()));
    }
    ed.setExample(focus.getExampleFirstRep().getValue());
    ed.setMeaningWhenMissing(focus.getMeaningWhenMissing());
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_TRANSLATABLE)) {
        ed.setTranslatable(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_TRANSLATABLE));
    }
    ed.setOrderMeaning(focus.getOrderMeaning());
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)) {
        ed.setStandardsStatus(StandardsStatus.fromCode(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION)) {
        ed.setNormativeVersion(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION));
    }
    for (ElementDefinitionConstraintComponent cst : focus.getConstraint()) {
        Invariant inv = new Invariant();
        inv.setContext(focus.getPath());
        inv.setEnglish(cst.getHuman());
        if (cst.hasExtension(BuildExtensions.EXT_OCL)) {
            inv.setOcl(cst.getExtensionString(BuildExtensions.EXT_OCL));
        }
        inv.setXpath(cst.getXpath());
        inv.setId(cst.getKey());
        if (cst.hasExtension(BuildExtensions.EXT_FIXED_NAME)) {
            inv.setFixedName(cst.getExtensionString(BuildExtensions.EXT_FIXED_NAME));
        }
        inv.setSeverity(cst.getSeverity().toCode());
        if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE)) {
            inv.setSeverity("best-practice");
        }
        if (cst.hasExtension(BuildExtensions.EXT_TURTLE)) {
            inv.setTurtle(cst.getExtensionString(BuildExtensions.EXT_TURTLE));
        }
        inv.setRequirements(cst.getRequirements());
        inv.setExpression(cst.getExpression());
        if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION)) {
            inv.setExplanation(cst.getExtensionString(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION));
        }
        ed.getInvariants().put(inv.getId(), inv);
        invariants.put(inv.getId(), inv);
    }
    for (IdType cnd : focus.getCondition()) {
        Invariant inv = invariants.get(cnd.primitiveValue());
        if (inv == null) {
            System.out.println("Unable to find invariant " + cnd.primitiveValue());
        } else {
            ed.getStatedInvariants().add(inv);
        }
    }
    for (ElementDefinitionMappingComponent map : focus.getMapping()) {
        String uri = getMappingUri(sd, map.getIdentity());
        if ("http://hl7.org/fhir/fivews".equals(uri)) {
            ed.setW5(reverseW5(map.getMap()));
        } else {
            ed.getMappings().put(uri, map.getMap());
        }
    }
    if (focus.hasContentReference()) {
        ed.getTypes().add(new TypeRef("@" + focus.getContentReference().substring(1)));
    } else {
        for (TypeRefComponent tr : focus.getType()) {
            if (!Utilities.existsInList(tr.getCode(), "Element", "BackboneElement")) {
                TypeRef t = new TypeRef();
                ed.getTypes().add(t);
                if (tr.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type")) {
                    t.setName(tr.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"));
                } else {
                    t.setName(tr.getCode());
                }
                if (ToolingExtensions.hasExtension(tr, BuildExtensions.EXT_HIERARCHY)) {
                    ed.setHierarchy(ToolingExtensions.readBoolExtension(tr, BuildExtensions.EXT_HIERARCHY));
                }
                for (CanonicalType u : tr.getProfile()) {
                    t.setProfile(u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", ""));
                }
                for (CanonicalType u : tr.getTargetProfile()) {
                    String s = u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", "");
                    if ("Resource".equals(s)) {
                        t.getParams().add("Any");
                    } else {
                        t.getParams().add(s);
                    }
                }
                if (t.getName().equals("Quantity") && "SimpleQuantity".equals(t.getProfile())) {
                    t.setName("SimpleQuantity");
                    t.setProfile(null);
                }
                if ("Resource".equals(t.getProfile())) {
                    t.setProfile("Any");
                }
                if (t.getParams().toString().equals("[ActivityDefinition, EventDefinition, EvidenceVariable, Measure, OperationDefinition, PlanDefinition, Questionnaire, SubscriptionTopic]")) {
                    t.getParams().clear();
                    t.getParams().add("Definition");
                }
            }
        }
        if (ed.getTypes().size() == STAR_TYPES_COUNT) {
            ed.getTypes().clear();
            ed.getTypes().add(new TypeRef("*"));
        }
    }
    String name = parentName + Utilities.capitalize(ed.getName());
    if (focus.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name")) {
        ed.setStatedType(focus.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name"));
        ed.setDeclaredTypeName(ed.getStatedType());
    } else if (ed.getTypes().isEmpty() && !focus.hasContentReference()) {
        ed.setDeclaredTypeName(name + "Component");
    }
    if (focus.hasBinding()) {
        ed.setBinding(parseBinding(focus.getBinding()));
    }
    for (ElementDefinition child : pu.getChildList(sd, focus, true, false)) {
        ElementDefn c = new ElementDefn();
        ed.getElements().add(c);
        parseED(pu, c, child, sd, name);
    }
// todo:
// private ElementDefinition derivation;
}