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Example 36 with PrimitiveType

use of org.hl7.fhir.dstu2.model.PrimitiveType in project org.hl7.fhir.core by hapifhir.

the class ObjectConverter method convertElement.

private Element convertElement(Property property, Base base) throws FHIRException {
    if (base == null)
        return null;
    String tn = base.fhirType();
    StructureDefinition sd = context.fetchResource(StructureDefinition.class, ProfileUtilities.sdNs(tn, context.getOverrideVersionNs()));
    if (sd == null)
        throw new FHIRException("Unable to find definition for type " + tn);
    Element res = new Element(property.getName(), property);
    if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
        res.setValue(((PrimitiveType) base).asStringValue());
    List<ElementDefinition> children = ProfileUtilities.getChildMap(sd, sd.getSnapshot().getElementFirstRep());
    for (ElementDefinition child : children) {
        String n = tail(child.getPath());
        if (sd.getKind() != StructureDefinitionKind.PRIMITIVETYPE || !"value".equals(n)) {
            Base[] values = base.getProperty(n.hashCode(), n, false);
            if (values != null)
                for (Base value : values) {
                    res.getChildren().add(convertElement(new Property(context, child, sd), value));
                }
        }
    }
    return res;
}
Also used : StructureDefinition(org.hl7.fhir.r4.model.StructureDefinition) PrimitiveType(org.hl7.fhir.r4.model.PrimitiveType) ElementDefinition(org.hl7.fhir.r4.model.ElementDefinition) FHIRException(org.hl7.fhir.exceptions.FHIRException) Base(org.hl7.fhir.r4.model.Base)

Example 37 with PrimitiveType

use of org.hl7.fhir.dstu2.model.PrimitiveType in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateVersionNotice.

@SuppressWarnings("rawtypes")
private void generateVersionNotice(XhtmlNode x, ValueSetExpansionComponent expansion) {
    Map<String, String> versions = new HashMap<String, String>();
    boolean firstVersion = true;
    for (ValueSetExpansionParameterComponent p : expansion.getParameter()) {
        if (p.getName().equals("version")) {
            String[] parts = ((PrimitiveType) p.getValue()).asStringValue().split("\\|");
            if (parts.length == 2)
                versions.put(parts[0], parts[1]);
            if (!versions.isEmpty()) {
                StringBuilder b = new StringBuilder();
                if (firstVersion) {
                    // the first version
                    // set the <p> tag and style attribute
                    x.para().setAttribute("style", "border: black 1px dotted; background-color: #EEEEEE; padding: 8px");
                    firstVersion = false;
                } else {
                    // the second (or greater) version
                    // add line break before the version text
                    x.br();
                }
                b.append("Expansion based on ");
                boolean firstPart = true;
                for (String s : versions.keySet()) {
                    if (firstPart)
                        firstPart = false;
                    else
                        b.append(", ");
                    if (!s.equals("http://snomed.info/sct"))
                        b.append(describeSystem(s) + " version " + versions.get(s));
                    else {
                        parts = versions.get(s).split("\\/");
                        if (parts.length >= 5) {
                            String m = describeModule(parts[4]);
                            if (parts.length == 7)
                                b.append("SNOMED CT " + m + " edition " + formatSCTDate(parts[6]));
                            else
                                b.append("SNOMED CT " + m + " edition");
                        } else
                            b.append(describeSystem(s) + " version " + versions.get(s));
                    }
                }
                // add the version text
                x.addText(b.toString());
            }
        }
    }
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder)

Example 38 with PrimitiveType

use of org.hl7.fhir.dstu2.model.PrimitiveType in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode parent, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent) throws FHIRException, UnsupportedEncodingException, IOException, EOperationOutcome {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        renderDateTime(x, e);
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r5.model.DateType) {
        org.hl7.fhir.r5.model.DateType dt = ((org.hl7.fhir.r5.model.DateType) e);
        renderDate(x, dt);
    } else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType) {
        x.addText(((BooleanType) e).getValue().toString());
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept(x, (CodeableConcept) e, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding(x, (Coding) e, showCodeDetails);
    } else if (e instanceof CodeableReference) {
        renderCodeableReference(x, (CodeableReference) e, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation(x, (Annotation) e);
    } else if (e instanceof Identifier) {
        renderIdentifier(x, (Identifier) e);
    } else if (e instanceof org.hl7.fhir.r5.model.IntegerType) {
        if (((org.hl7.fhir.r5.model.IntegerType) e).hasValue()) {
            x.addText(Integer.toString(((org.hl7.fhir.r5.model.IntegerType) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.Integer64Type) {
        if (((org.hl7.fhir.r5.model.Integer64Type) e).hasValue()) {
            x.addText(Long.toString(((org.hl7.fhir.r5.model.Integer64Type) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.DecimalType) {
        x.addText(((org.hl7.fhir.r5.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName(x, (HumanName) e);
    } else if (e instanceof SampledData) {
        renderSampledData(x, (SampledData) e);
    } else if (e instanceof Address) {
        renderAddress(x, (Address) e);
    } else if (e instanceof ContactPoint) {
        renderContactPoint(x, (ContactPoint) e);
    } else if (e instanceof Expression) {
        renderExpression(x, (Expression) e);
    } else if (e instanceof Money) {
        renderMoney(x, (Money) e);
    } else if (e instanceof ContactDetail) {
        ContactDetail cd = (ContactDetail) e;
        if (cd.hasName()) {
            x.tx(cd.getName() + ": ");
        }
        boolean first = true;
        for (ContactPoint c : cd.getTelecom()) {
            if (first)
                first = false;
            else
                x.tx(",");
            renderContactPoint(x, c);
        }
    } else if (e instanceof UriType) {
        renderUri(x, (UriType) e, defn.getPath(), rcontext != null && rcontext.getResourceResource() != null ? rcontext.getResourceResource().getId() : null);
    } else if (e instanceof Timing) {
        renderTiming(x, (Timing) e);
    } else if (e instanceof Range) {
        renderRange(x, (Range) e);
    } else if (e instanceof Quantity) {
        renderQuantity(x, (Quantity) e, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(x, ((Ratio) e).getNumerator(), showCodeDetails);
        x.tx("/");
        renderQuantity(x, ((Ratio) e).getDenominator(), showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        renderPeriod(x, p);
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.getReference() != null && r.getReference().contains("#")) {
            if (containedIds.contains(r.getReference().substring(1))) {
                x.ah(r.getReference()).tx("See " + r.getReference());
            } else {
                // in this case, we render the resource in line
                ResourceWrapper rw = null;
                for (ResourceWrapper t : res.getContained()) {
                    if (r.getReference().substring(1).equals(t.getId())) {
                        rw = t;
                    }
                }
                if (rw == null) {
                    renderReference(res, x, r);
                } else {
                    x.an(rw.getId());
                    ResourceRenderer rr = RendererFactory.factory(rw, context.copy().setAddGeneratedNarrativeHeader(false));
                    rr.render(parent.blockquote(), rw);
                }
            }
        } else {
            renderReference(res, x, r);
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof DataRequirement) {
        DataRequirement p = (DataRequirement) e;
        renderDataRequirement(x, p);
    } else if (e instanceof PrimitiveType) {
        x.tx(((PrimitiveType) e).primitiveValue());
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled - should not be here");
    }
}
Also used : ResourceWrapper(org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper) Meta(org.hl7.fhir.r5.model.Meta) Address(org.hl7.fhir.r5.model.Address) StringType(org.hl7.fhir.r5.model.StringType) Attachment(org.hl7.fhir.r5.model.Attachment) DataRequirement(org.hl7.fhir.r5.model.DataRequirement) Identifier(org.hl7.fhir.r5.model.Identifier) Coding(org.hl7.fhir.r5.model.Coding) Narrative(org.hl7.fhir.r5.model.Narrative) SampledData(org.hl7.fhir.r5.model.SampledData) PrimitiveType(org.hl7.fhir.r5.model.PrimitiveType) ElementDefinition(org.hl7.fhir.r5.model.ElementDefinition) InstantType(org.hl7.fhir.r5.model.InstantType) Resource(org.hl7.fhir.r5.model.Resource) DomainResource(org.hl7.fhir.r5.model.DomainResource) Period(org.hl7.fhir.r5.model.Period) Range(org.hl7.fhir.r5.model.Range) IdType(org.hl7.fhir.r5.model.IdType) DateTimeType(org.hl7.fhir.r5.model.DateTimeType) Timing(org.hl7.fhir.r5.model.Timing) CodeableConcept(org.hl7.fhir.r5.model.CodeableConcept) Base64(org.apache.commons.codec.binary.Base64) NotImplementedException(org.apache.commons.lang3.NotImplementedException) UriType(org.hl7.fhir.r5.model.UriType) HumanName(org.hl7.fhir.r5.model.HumanName) ContactPoint(org.hl7.fhir.r5.model.ContactPoint) Money(org.hl7.fhir.r5.model.Money) Ratio(org.hl7.fhir.r5.model.Ratio) Enumeration(org.hl7.fhir.r5.model.Enumeration) Reference(org.hl7.fhir.r5.model.Reference) ResourceWithReference(org.hl7.fhir.r5.renderers.utils.Resolver.ResourceWithReference) CodeableReference(org.hl7.fhir.r5.model.CodeableReference) BooleanType(org.hl7.fhir.r5.model.BooleanType) Quantity(org.hl7.fhir.r5.model.Quantity) Base(org.hl7.fhir.r5.model.Base) Annotation(org.hl7.fhir.r5.model.Annotation) Extension(org.hl7.fhir.r5.model.Extension) ContactDetail(org.hl7.fhir.r5.model.ContactDetail) Expression(org.hl7.fhir.r5.model.Expression) CodeableReference(org.hl7.fhir.r5.model.CodeableReference) CodeType(org.hl7.fhir.r5.model.CodeType) Base64BinaryType(org.hl7.fhir.r5.model.Base64BinaryType)

Example 39 with PrimitiveType

use of org.hl7.fhir.dstu2.model.PrimitiveType in project org.hl7.fhir.core by hapifhir.

the class DataRenderer method renderExpression.

private boolean renderExpression(CommaSeparatedStringBuilder c, PrimitiveType p) {
    Extension exp = p.getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/cqf-expression");
    if (exp == null) {
        return false;
    }
    c.append(exp.getValueExpression().getExpression());
    return true;
}
Also used : Extension(org.hl7.fhir.r5.model.Extension)

Example 40 with PrimitiveType

use of org.hl7.fhir.dstu2.model.PrimitiveType in project kindling by HL7.

the class ProfileGenerator method generate.

public StructureDefinition generate(PrimitiveType type) throws Exception {
    genUml(type);
    StructureDefinition p = new StructureDefinition();
    p.setId(type.getCode());
    p.setUrl("http://hl7.org/fhir/StructureDefinition/" + type.getCode());
    p.setKind(StructureDefinitionKind.PRIMITIVETYPE);
    p.setAbstract(false);
    p.setUserData("filename", type.getCode().toLowerCase());
    p.setUserData("path", "datatypes.html#" + type.getCode());
    p.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/PrimitiveType");
    p.setType(type.getCode());
    p.setDerivation(TypeDerivationRule.SPECIALIZATION);
    p.setFhirVersion(version);
    p.setVersion(version.toCode());
    ToolingExtensions.setStandardsStatus(p, StandardsStatus.NORMATIVE, "4.0.0");
    ToolResourceUtilities.updateUsage(p, "core");
    p.setName(type.getCode());
    p.setPublisher("HL7 FHIR Standard");
    p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    p.setDescription("Base StructureDefinition for " + type.getCode() + " Type: " + type.getDefinition());
    p.setDate(genDate.getTime());
    // normative now
    p.setStatus(PublicationStatus.fromCode("active"));
    Set<String> containedSlices = new HashSet<String>();
    // first, the differential
    p.setDifferential(new StructureDefinitionDifferentialComponent());
    ElementDefinition ec = new ElementDefinition();
    p.getDifferential().getElement().add(ec);
    ec.setId(type.getCode());
    ec.setPath(type.getCode());
    ec.setShort("Primitive Type " + type.getCode());
    ec.setDefinition(type.getDefinition());
    ec.setComment(type.getComment());
    ec.setMin(0);
    ec.setMax("*");
    ec = new ElementDefinition();
    p.getDifferential().getElement().add(ec);
    ec.setId(type.getCode() + ".value");
    ec.setPath(type.getCode() + ".value");
    ec.addRepresentation(PropertyRepresentation.XMLATTR);
    ec.setShort("Primitive value for " + type.getCode());
    ec.setDefinition("Primitive value for " + type.getCode());
    ec.setMin(0);
    ec.setMax("1");
    TypeRefComponent t = ec.addType();
    t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (a)");
    t.setCode(Constants.NS_SYSTEM_TYPE + type.getFHIRPathType());
    ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, type.getCode());
    if (!Utilities.noString(type.getRegex())) {
        ToolingExtensions.addStringExtension(t, ToolingExtensions.EXT_REGEX, type.getRegex());
    }
    addSpecificDetails(type, ec);
    reset();
    // now. the snapshot
    p.setSnapshot(new StructureDefinitionSnapshotComponent());
    ElementDefinition ec1 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
    p.getSnapshot().getElement().add(ec1);
    ec1.setId(type.getCode());
    ec1.setPath(type.getCode());
    ec1.setShort("Primitive Type " + type.getCode());
    ec1.setDefinition(type.getDefinition());
    ec1.setComment(type.getComment());
    ec1.setMin(0);
    ec1.setMax("*");
    ec1.makeBase();
    addElementConstraints("Element", ec1);
    ElementDefinition ec2 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
    p.getSnapshot().getElement().add(ec2);
    ec2.setId(type.getCode() + ".id");
    ec2.setPath(type.getCode() + ".id");
    ec2.addRepresentation(PropertyRepresentation.XMLATTR);
    ec2.setDefinition("unique id for the element within a resource (for internal references)");
    ec2.setMin(0);
    ec2.setMax("1");
    ec2.setShort("xml:id (or equivalent in JSON)");
    TypeRefComponent tr = ec2.addType();
    t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (b)");
    tr.setCode(Constants.NS_SYSTEM_TYPE + "String");
    ToolingExtensions.addUriExtension(tr, ToolingExtensions.EXT_FHIR_TYPE, "string");
    generateElementDefinition(p, ec2, ec1);
    ec2.makeBase("Element.id", 0, "1");
    makeExtensionSlice("extension", p, p.getSnapshot(), null, type.getCode());
    ElementDefinition ec3 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
    p.getSnapshot().getElement().add(ec3);
    ec3.setId(type.getCode() + ".value");
    ec3.setPath(type.getCode() + ".value");
    ec3.addRepresentation(PropertyRepresentation.XMLATTR);
    ec3.setDefinition("The actual value");
    ec3.setMin(0);
    ec3.setMax("1");
    ec3.setShort("Primitive value for " + type.getCode());
    ec3.makeBase();
    t = ec3.addType();
    t.setCodeElement(new UriType());
    t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (c)");
    t.setCode(Constants.NS_SYSTEM_TYPE + type.getFHIRPathType());
    ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, type.getCode());
    if (!Utilities.noString(type.getRegex()))
        ToolingExtensions.addStringExtension(t, ToolingExtensions.EXT_REGEX, type.getRegex());
    addSpecificDetails(type, ec3);
    generateElementDefinition(p, ec3, ec);
    containedSlices.clear();
    addElementConstraintToSnapshot(p);
    XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
    div.addText("to do");
    p.setText(new Narrative());
    p.getText().setStatus(NarrativeStatus.GENERATED);
    p.getText().setDiv(div);
    checkHasTypes(p);
    return p;
}
Also used : StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) TypeRefComponent(org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent) Narrative(org.hl7.fhir.r5.model.Narrative) StructureDefinitionSnapshotComponent(org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionSnapshotComponent) StructureDefinitionDifferentialComponent(org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionDifferentialComponent) ElementDefinition(org.hl7.fhir.r5.model.ElementDefinition) HashSet(java.util.HashSet) UriType(org.hl7.fhir.r5.model.UriType) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode)

Aggregations

FHIRException (org.hl7.fhir.exceptions.FHIRException)18 EqualsBuilder (org.apache.commons.lang3.builder.EqualsBuilder)12 IPrimitiveType (org.hl7.fhir.instance.model.api.IPrimitiveType)12 IOException (java.io.IOException)10 NotImplementedException (org.apache.commons.lang3.NotImplementedException)10 ParameterizedTest (org.junit.jupiter.params.ParameterizedTest)9 MethodSource (org.junit.jupiter.params.provider.MethodSource)9 PrimitiveType (org.hl7.fhir.r5.model.PrimitiveType)8 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)8 URISyntaxException (java.net.URISyntaxException)6 PrimitiveType (org.hl7.fhir.definitions.model.PrimitiveType)6 FileNotFoundException (java.io.FileNotFoundException)5 ArrayList (java.util.ArrayList)5 PrimitiveType (org.hl7.fhir.dstu3.model.PrimitiveType)5 PrimitiveType (org.hl7.fhir.r4b.model.PrimitiveType)5 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)5 URI (java.net.URI)4 ElementDefn (org.hl7.fhir.definitions.model.ElementDefn)4 StringType (org.hl7.fhir.dstu3.model.StringType)4 ParserConfigurationException (javax.xml.parsers.ParserConfigurationException)3