use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class TypeParser method convert.
public List<TypeRefComponent> convert(IWorkerContext context, String path, List<TypeRef> types, boolean resource, ElementDefinition ed) throws Exception {
List<TypeRefComponent> list = new ArrayList<TypeRefComponent>();
for (TypeRef t : types) {
// Expand any Resource(A|B|C) references
if (t.hasParams() && !("Reference".equals(t.getName()) || "canonical".equals(t.getName()))) {
throw new Exception("Only resource references can specify parameters. Path " + path);
}
if (t.getParams().size() > 0) {
if (t.getProfile() != null && t.getParams().size() != 1) {
throw new Exception("Cannot declare profile on a resource reference declaring multiple resource types. Path " + path);
}
if (t.getProfile() != null) {
TypeRefComponent childType = getTypeComponent(list, t.getName());
if (t.getVersioning() != null)
childType.setVersioning(t.getVersioning());
if (t.getName().equals("Reference") || t.getName().equals("canonical"))
childType.addTargetProfile(t.getProfile());
else
childType.addProfile(t.getProfile());
} else
for (String param : t.getParams()) {
TypeRefComponent childType = getTypeComponent(list, t.getName());
if (t.getVersioning() != null)
childType.setVersioning(t.getVersioning());
String p = "Any".equals(param) ? "Resource" : param;
if (t.getName().equals("Reference") || t.getName().equals("canonical"))
childType.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + p);
else
childType.addProfile("http://hl7.org/fhir/StructureDefinition/" + p);
}
} else if (t.isWildcardType()) {
// this list is filled out manually because it may be running before the types referred to have been loaded
for (String n : TypesUtilities.wildcardTypes(version)) {
TypeRefComponent tc = new TypeRefComponent().setCode(n);
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
list.add(tc);
}
} else if (Utilities.noString(t.getName()) && t.getProfile() != null) {
StructureDefinition sd = context.fetchResource(StructureDefinition.class, t.getProfile());
TypeRefComponent tc = getTypeComponent(list, sd != null ? sd.getType() : t.getName());
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
if (t.getName().equals("Reference"))
tc.addTargetProfile(t.getProfile());
else
tc.addProfile(t.getProfile());
} else if (t.getName().startsWith("=")) {
if (resource)
list.add(new TypeRefComponent().setCode("BackboneElement"));
else
list.add(new TypeRefComponent().setCode("Element"));
ToolingExtensions.addStringExtension(ed, "http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name", t.getName().substring(1));
} else {
StructureDefinition sd = context.fetchTypeDefinition(t.getName());
if (sd == null)
throw new Exception("Unknown type '" + t.getName() + "'");
TypeRefComponent tc = getTypeComponent(list, sd.getType());
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
if (t.getName().equals("Reference")) {
if (t.hasProfile())
tc.addTargetProfile(t.getProfile());
} else if (t.hasProfile())
tc.addProfile(t.getProfile());
}
}
// no duplicates
for (TypeRefComponent tr1 : list) {
for (TypeRefComponent tr2 : list) {
if (tr1 != tr2) {
if (tr1.getWorkingCode().equals(tr2.getWorkingCode()))
throw new Exception("duplicate code " + tr1.getWorkingCode());
}
}
}
return list;
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class OldSpreadsheetParser method parseProfileSheet.
private ConstraintStructure parseProfileSheet(Definitions definitions, Profile ap, String n, List<String> namedSheets, boolean published, String usage, List<ValidationMessage> issues, WorkGroup wg, String fmm) throws Exception {
Sheet sheet;
ResourceDefn resource = new ResourceDefn();
sheet = loadSheet(n + "-Inv");
Map<String, Invariant> invariants = null;
if (sheet != null) {
invariants = readInvariants(sheet, n, n + "-Inv");
} else {
invariants = new HashMap<String, Invariant>();
}
sheet = loadSheet(n);
if (sheet == null)
throw new Exception("The StructureDefinition referred to a tab by the name of '" + n + "', but no tab by the name could be found");
for (int row = 0; row < sheet.rows.size(); row++) {
ElementDefn e = processLine(resource, sheet, row, invariants, true, ap, row == 0);
if (e != null)
for (TypeRef t : e.getTypes()) {
if (t.getProfile() != null && !t.getName().equals("Extension") && t.getProfile().startsWith("#")) {
if (!namedSheets.contains(t.getProfile().substring(1)))
namedSheets.add(t.getProfile().substring(1));
}
}
}
sheet = loadSheet(n + "-Extensions");
if (sheet != null) {
int row = 0;
while (row < sheet.rows.size()) {
if (sheet.getColumn(row, "Code").startsWith("!"))
row++;
else
row = processExtension(resource.getRoot().getElementByName(definitions, "extensions", true, false), sheet, row, definitions, ap.metadata("extension.uri"), ap, issues, invariants, wg);
}
}
sheet = loadSheet(n + "-Search");
if (sheet != null) {
readSearchParams(resource, sheet, true);
}
if (invariants != null) {
for (Invariant inv : invariants.values()) {
if (Utilities.noString(inv.getContext()))
throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " has no context");
else {
ElementDefn ed = findContext(resource.getRoot(), inv.getContext(), "Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " Context");
// TODO: Need to resolve context based on element name, not just path
if (ed.getName().endsWith("[x]") && !inv.getContext().endsWith("[x]"))
inv.setFixedName(inv.getContext().substring(inv.getContext().lastIndexOf(".") + 1));
ed.getInvariants().put(inv.getId(), inv);
if (Utilities.noString(inv.getXpath())) {
throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") has no XPath statement");
} else if (inv.getXpath().contains("\""))
throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") contains a \" character");
// if (Utilities.noString(inv.getExpression()))
// throw new Exception("Type "+resource.getRoot().getName()+" Invariant "+inv.getId()+" ("+inv.getEnglish()+") has no Expression statement (in FHIRPath format)");
}
}
}
resource.getRoot().setProfileName(n);
if (n.toLowerCase().equals(ap.getId()))
throw new Exception("Duplicate Profile Name: Package id " + ap.getId() + " and profile id " + n.toLowerCase() + " are the same");
if (profileIds.containsKey(n.toLowerCase()))
throw new Exception("Duplicate Profile Name: " + n.toLowerCase() + " in " + ap.getId() + ", already registered in " + profileIds.get(n.toLowerCase()).getOwner());
ConstraintStructure p = new ConstraintStructure(n.toLowerCase(), resource.getRoot().getProfileName(), resource, ig != null ? ig : definitions.getUsageIG(usage, "Parsing " + name), wg, fmm, Utilities.existsInList(ap.metadata("Experimental"), "y", "Y", "true", "TRUE", "1"));
p.setOwner(ap.getId());
profileIds.put(n.toLowerCase(), p);
return p;
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class OldSpreadsheetParser method resolveElementReferences.
private void resolveElementReferences(ResourceDefn parent, ElementDefn root) throws Exception {
for (TypeRef ref : root.getTypes()) {
if (ref.isElementReference()) {
ElementDefn referredElement = parent.getRoot().getElementByName(definitions, ref.getName().substring(1), true, false, null);
if (referredElement == null)
throw new Exception("Element reference " + ref.getName() + " cannot be found in type " + parent.getName());
if (referredElement.getDeclaredTypeName() == null)
throw new Exception("Element reference " + ref.getName() + " in " + parent.getName() + " refers to an anonymous group of elements. Please specify names with the '=<name>' construct in the typename column.");
ref.setResolvedTypeName(referredElement.getDeclaredTypeName());
}
}
for (ElementDefn element : root.getElements()) {
resolveElementReferences(parent, element);
}
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class OldSpreadsheetParser method scanNestedTypes.
private void scanNestedTypes(ResourceDefn parent, ElementDefn root, String parentName) throws Exception {
for (ElementDefn element : root.getElements()) {
if (element.hasNestedElements()) {
String nestedTypeName;
ElementDefn newCompositeType = new ElementDefn();
// generated name for this nested type
if (element.typeCode().startsWith("=")) {
if (isProfile)
throw new Exception("Cannot use '=' types in profiles on " + parentName);
element.setStatedType(element.typeCode().substring(1));
nestedTypeName = element.typeCode().substring(1);
} else {
nestedTypeName = parentName + Utilities.capitalize(element.getName());
}
newCompositeType.setAnonymousTypedGroup(true);
// Add Component to the actually generated name to avoid
// confusing between the element name and the element's type
newCompositeType.setName(nestedTypeName + "Component");
newCompositeType.setDefinition("A nested type in " + parent.getName() + ": " + element.getDefinition());
newCompositeType.getElements().addAll(element.getElements());
if (parent.getRoot().getNestedTypes().containsKey(nestedTypeName))
throw new Exception("Nested type " + nestedTypeName + " already exist in resource " + parent.getName());
parent.getRoot().getNestedTypes().put(nestedTypeName, newCompositeType);
// Clear out the name of the local type, so old code
// will not see a change.
element.getTypes().clear();
element.setDeclaredTypeName(newCompositeType.getName());
scanNestedTypes(parent, element, nestedTypeName);
}
}
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class OldSpreadsheetParser method findContext.
private ElementDefn findContext(ElementDefn root, String pathname, String source) throws Exception {
String[] path = pathname.split("\\.");
if (!path[0].equals(root.getName()))
throw new Exception("Element Path '" + pathname + "' is not legal found at " + source);
ElementDefn res = root;
for (int i = 1; i < path.length; i++) {
String en = path[i];
if (en.length() == 0)
throw new Exception("Improper path " + pathname + " found at " + source);
if (en.charAt(en.length() - 1) == '*')
throw new Exception("no-list wrapper found at " + source);
ElementDefn t = res.getElementByName(en, true, definitions, "find context", false);
if (t == null) {
throw new Exception("Reference to undefined Element " + pathname + " found at " + source);
}
res = t;
}
return res;
}
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