use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class XmlValidator method checkBySchema.
public Element checkBySchema(String fileToCheck, boolean wantThrow) throws FileNotFoundException, SAXException, IOException, ParserConfigurationException, FHIRException {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(true);
factory.setValidating(false);
factory.setSchema(schema);
DocumentBuilder builder = factory.newDocumentBuilder();
MyErrorHandler err = new MyErrorHandler(errors, fileToCheck);
builder.setErrorHandler(err);
CSFileInputStream f = new CSFileInputStream(new CSFile(fileToCheck));
Document doc = builder.parse(f);
if (wantThrow && err.getErrors().size() > 0)
throw new FHIRException("File " + fileToCheck + " failed schema validation");
return doc.getDocumentElement();
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class ResourceParser method parseED.
private void parseED(ProfileUtilities pu, ElementDefn ed, ElementDefinition focus, StructureDefinition sd, String parentName) throws IOException {
ed.setMinCardinality(focus.getMin());
ed.setMaxCardinality("*".equals(focus.getMax()) ? Integer.MAX_VALUE : Integer.parseInt(focus.getMax()));
ed.setIsModifier(focus.getIsModifier());
ed.setModifierReason(focus.getIsModifierReason());
ed.setMustSupport(focus.getMustSupport());
ed.setSummaryItem(focus.getIsSummary());
ed.setRegex(ToolingExtensions.readStringExtension(focus, ToolingExtensions.EXT_REGEX));
ed.setXmlAttribute(focus.hasRepresentation(PropertyRepresentation.XMLATTR));
if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_DIR)) {
ed.setUmlDir(ToolingExtensions.readStringExtension(focus, BuildExtensions.EXT_UML_DIR));
}
if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_BREAK)) {
ed.setUmlBreak(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_UML_BREAK));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_SVG)) {
String svg = BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_SVG);
if (svg.contains("w=")) {
ed.setSvgWidth(Integer.parseInt(svg.substring(svg.indexOf("w=") + 2)));
svg = svg.substring(0, svg.indexOf(";"));
}
ed.setSvgLeft(Integer.parseInt(svg.substring(0, svg.indexOf(","))));
ed.setSvgTop(Integer.parseInt(svg.substring(svg.indexOf(",") + 1)));
}
ed.setName(tail(focus.getPath()));
ed.setShortDefn(focus.getShort());
ed.setDefinition(focus.getDefinition());
ed.setRequirements(focus.getRequirements());
ed.setComments(focus.getComment());
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_TODO)) {
ed.setTodo(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_TODO));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES)) {
ed.setCommitteeNotes(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_HINT)) {
ed.setDisplayHint(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_HINT));
}
if (focus.hasExtension(BuildExtensions.EXT_NO_BINDING)) {
ed.setNoBindingAllowed(focus.getExtensionString(BuildExtensions.EXT_NO_BINDING).equals("true"));
}
for (StringType t : focus.getAlias()) {
ed.getAliases().add(t.getValue());
}
if (focus.hasMaxLength()) {
ed.setMaxLength(Integer.toString(focus.getMaxLength()));
}
ed.setExample(focus.getExampleFirstRep().getValue());
ed.setMeaningWhenMissing(focus.getMeaningWhenMissing());
if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_TRANSLATABLE)) {
ed.setTranslatable(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_TRANSLATABLE));
}
ed.setOrderMeaning(focus.getOrderMeaning());
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)) {
ed.setStandardsStatus(StandardsStatus.fromCode(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION)) {
ed.setNormativeVersion(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION));
}
for (ElementDefinitionConstraintComponent cst : focus.getConstraint()) {
Invariant inv = new Invariant();
inv.setContext(focus.getPath());
inv.setEnglish(cst.getHuman());
if (cst.hasExtension(BuildExtensions.EXT_OCL)) {
inv.setOcl(cst.getExtensionString(BuildExtensions.EXT_OCL));
}
inv.setXpath(cst.getXpath());
inv.setId(cst.getKey());
if (cst.hasExtension(BuildExtensions.EXT_FIXED_NAME)) {
inv.setFixedName(cst.getExtensionString(BuildExtensions.EXT_FIXED_NAME));
}
inv.setSeverity(cst.getSeverity().toCode());
if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE)) {
inv.setSeverity("best-practice");
}
if (cst.hasExtension(BuildExtensions.EXT_TURTLE)) {
inv.setTurtle(cst.getExtensionString(BuildExtensions.EXT_TURTLE));
}
inv.setRequirements(cst.getRequirements());
inv.setExpression(cst.getExpression());
if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION)) {
inv.setExplanation(cst.getExtensionString(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION));
}
ed.getInvariants().put(inv.getId(), inv);
invariants.put(inv.getId(), inv);
}
for (IdType cnd : focus.getCondition()) {
Invariant inv = invariants.get(cnd.primitiveValue());
if (inv == null) {
System.out.println("Unable to find invariant " + cnd.primitiveValue());
} else {
ed.getStatedInvariants().add(inv);
}
}
for (ElementDefinitionMappingComponent map : focus.getMapping()) {
String uri = getMappingUri(sd, map.getIdentity());
if ("http://hl7.org/fhir/fivews".equals(uri)) {
ed.setW5(reverseW5(map.getMap()));
} else {
ed.getMappings().put(uri, map.getMap());
}
}
if (focus.hasContentReference()) {
ed.getTypes().add(new TypeRef("@" + focus.getContentReference().substring(1)));
} else {
for (TypeRefComponent tr : focus.getType()) {
if (!Utilities.existsInList(tr.getCode(), "Element", "BackboneElement")) {
TypeRef t = new TypeRef();
ed.getTypes().add(t);
if (tr.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type")) {
t.setName(tr.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"));
} else {
t.setName(tr.getCode());
}
if (ToolingExtensions.hasExtension(tr, BuildExtensions.EXT_HIERARCHY)) {
ed.setHierarchy(ToolingExtensions.readBoolExtension(tr, BuildExtensions.EXT_HIERARCHY));
}
for (CanonicalType u : tr.getProfile()) {
t.setProfile(u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", ""));
}
for (CanonicalType u : tr.getTargetProfile()) {
String s = u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", "");
if ("Resource".equals(s)) {
t.getParams().add("Any");
} else {
t.getParams().add(s);
}
}
if (t.getName().equals("Quantity") && "SimpleQuantity".equals(t.getProfile())) {
t.setName("SimpleQuantity");
t.setProfile(null);
}
if ("Resource".equals(t.getProfile())) {
t.setProfile("Any");
}
if (t.getParams().toString().equals("[ActivityDefinition, EventDefinition, EvidenceVariable, Measure, OperationDefinition, PlanDefinition, Questionnaire, SubscriptionTopic]")) {
t.getParams().clear();
t.getParams().add("Definition");
}
}
}
if (ed.getTypes().size() == STAR_TYPES_COUNT) {
ed.getTypes().clear();
ed.getTypes().add(new TypeRef("*"));
}
}
String name = parentName + Utilities.capitalize(ed.getName());
if (focus.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name")) {
ed.setStatedType(focus.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name"));
ed.setDeclaredTypeName(ed.getStatedType());
} else if (ed.getTypes().isEmpty() && !focus.hasContentReference()) {
ed.setDeclaredTypeName(name + "Component");
}
if (focus.hasBinding()) {
ed.setBinding(parseBinding(focus.getBinding()));
}
for (ElementDefinition child : pu.getChildList(sd, focus, true, false)) {
ElementDefn c = new ElementDefn();
ed.getElements().add(c);
parseED(pu, c, child, sd, name);
}
// todo:
// private ElementDefinition derivation;
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class SvgGenerator method drawElement.
private ClassItem drawElement(XMLWriter xml, String[] classNames) throws Exception {
// classNames.length == 1 && classNames[0].equals("Base");
boolean onlyElement = false;
if (classNames != null) {
for (String cn : classNames) {
if (definitions.getPrimitives().containsKey(cn)) {
DefinedCode cd = definitions.getPrimitives().get(cn);
ElementDefn fake = fakes.get(cn);
if (cd instanceof DefinedStringPattern) {
links.add(new Link(classes.get(fakes.get(((DefinedStringPattern) cd).getBase())), drawClass(xml, fake, false, null, true, null, cd, StandardsStatus.NORMATIVE), LinkType.SPECIALIZATION, null, null, PointKind.unknown, null, null));
} else {
ClassItem parent = classes.get(definitions.getElementDefn(version.isR4B() ? "Element" : "PrimitiveType"));
if (parent == null) {
drawClass(xml, fake, false, null, true, null, cd, StandardsStatus.NORMATIVE);
} else {
links.add(new Link(parent, drawClass(xml, fake, false, null, true, null, cd, StandardsStatus.NORMATIVE), LinkType.SPECIALIZATION, null, null, PointKind.unknown, null, null));
}
}
} else if ("xhtml".equals(cn)) {
DefinedCode cd = new DefinedCode("xhtml", "XHTML for resource narrative", null);
ElementDefn fake = fakes.get(cn);
ClassItem parent = classes.get(definitions.getElementDefn(version.isR4B() ? "Element" : "DataType"));
if (parent == null) {
drawClass(xml, fake, false, null, true, null, cd, StandardsStatus.NORMATIVE);
} else {
links.add(new Link(parent, drawClass(xml, fake, false, null, true, null, cd, StandardsStatus.NORMATIVE), LinkType.SPECIALIZATION, null, null, PointKind.unknown, null, null));
}
} else if (definitions.getConstraints().containsKey(cn)) {
ProfiledType cd = definitions.getConstraints().get(cn);
ElementDefn fake = fakes.get(cn);
ClassItem parent = classes.get(definitions.getElementDefn(cd.getBaseType()));
links.add(new Link(parent, drawClass(xml, fake, false, null, true, null, null, StandardsStatus.NORMATIVE), LinkType.CONSTRAINT, null, null, PointKind.unknown, null, null));
} else if (definitions.getPrimitives().containsKey(cn)) {
DefinedCode cd = new DefinedCode("xhtml", "XHTML for resource narrative", null);
ElementDefn fake = fakes.get(cn);
// links.add(new Link(item,
// , LinkType.SPECIALIZATION, null, null, PointKind.unknown, null, null));
drawClass(xml, fake, false, null, true, null, cd, StandardsStatus.NORMATIVE);
} else if (!onlyElement) {
ElementDefn e = definitions.getElementDefn(cn);
ClassItem parent = Utilities.noString(e.typeCode()) ? null : classes.get(definitions.getElementDefn(e.typeCode()));
if (parent == null) {
drawClass(xml, e, false, null, true, cn, null, e.getStandardsStatus());
} else {
links.add(new Link(parent, drawClass(xml, e, false, null, true, cn, null, e.getStandardsStatus()), LinkType.SPECIALIZATION, null, null, PointKind.unknown, null, null));
}
}
}
}
return null;
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class SvgGenerator method determineMetrics.
private Point determineMetrics(String[] classNames) throws Exception {
double width = textWidth("Element") * 1.8;
double height = HEADER_HEIGHT + GAP_HEIGHT * 2;
// if ("true".equals(ini.getStringProperty("diagram", "element-attributes"))) {
// height = height + LINE_HEIGHT + GAP_HEIGHT;
// width = textWidth("extension : Extension 0..*");
// }
Point p = new Point(0, 0, PointKind.unknown);
ClassItem item = new ClassItem(p.x, p.y, width, height, id);
classes.put(null, item);
double x = item.right() + MARGIN_X;
double y = item.bottom() + MARGIN_Y;
if (classNames != null) {
for (String cn : classNames) {
if (definitions.getPrimitives().containsKey(cn)) {
DefinedCode cd = definitions.getPrimitives().get(cn);
ElementDefn fake = new ElementDefn();
fake.setName(cn);
fakes.put(cn, fake);
if (cd instanceof DefinedStringPattern)
p = determineMetrics(fake, classes.get(fakes.get(((DefinedStringPattern) cd).getBase())), cn, false, cd);
else
p = determineMetrics(fake, item, cn, false, cd);
} else if ("xhtml".equals(cn)) {
ElementDefn fake = new ElementDefn();
fake.setName("xhtml");
fakes.put("xhtml", fake);
DefinedCode cd = new DefinedCode("xhtml", "XHTML for resource narrative", null);
p = determineMetrics(fake, item, cn, false, cd);
} else if (definitions.getConstraints().containsKey(cn)) {
ProfiledType cd = definitions.getConstraints().get(cn);
ElementDefn ed = definitions.getElementDefn(cd.getBaseType());
ClassItem parentClss = classes.get(ed);
ElementDefn fake = new ElementDefn();
fake.setName(cn);
fakes.put(cn, fake);
p = determineMetrics(fake, parentClss, cn, false, null);
} else {
ElementDefn c = definitions.getElementDefn(cn);
p = determineMetrics(c, item, c.getName(), false, null);
}
x = Math.max(x, p.x + MARGIN_X);
y = Math.max(y, p.y + MARGIN_Y);
}
}
return new Point(x, y, PointKind.unknown);
}
use of org.hl7.fhir.dstu2016may.model.Element in project kindling by HL7.
the class TurtleSpecGenerator method generateInner.
private void generateInner(ElementDefn root, boolean resource, boolean isAbstract) throws IOException, Exception {
String rn;
if (root.getName().equals("Extension"))
rn = "extension|modifierExtension";
else if (root.getName().equals("Meta"))
rn = "meta";
else if (root.getTypes().size() > 0 && (root.getTypes().get(0).getName().equals("Type") || (root.getTypes().get(0).getName().equals("Structure"))) || isAbstract)
rn = "[name]";
else
rn = root.getName();
write("@prefix fhir: <http://hl7.org/fhir/> .");
if (resource)
write("<span style=\"float: right\"><a title=\"Documentation for this format\" href=\"" + prefix + "rdf.html\"><img src=\"" + prefix + "help.png\" alt=\"doco\"/></a></span>\r\n");
write("\r\n");
write("\r\n");
if (resource) {
write("[ a fhir:");
if (defPage == null)
write("<span title=\"" + Utilities.escapeXml(root.getDefinition()) + "\"><b>");
else
write("<a href=\"" + (defPage + "#" + root.getName()) + "\" title=\"" + Utilities.escapeXml(root.getDefinition()) + "\" class=\"dict\"><b>");
write(rn);
if ((defPage == null))
write("</b></span>;");
else
write("</b></a>;");
write("\r\n fhir:nodeRole fhir:treeRoot; # if this is the parser root\r\n");
} else
write("[");
write("\r\n");
if (rn.equals(root.getName()) && resource) {
if (!Utilities.noString(root.typeCode())) {
write(" # from <a href=\"" + prefix + "resource.html\">Resource</a>: <a href=\"" + prefix + "resource.html#id\">.id</a>, <a href=\"" + prefix + "resource.html#meta\">.meta</a>, <a href=\"" + prefix + "resource.html#implicitRules\">.implicitRules</a>, and <a href=\"" + prefix + "resource.html#language\">.language</a>\r\n");
if (root.typeCode().equals("DomainResource"))
write(" # from <a href=\"" + prefix + "domainresource.html\">DomainResource</a>: <a href=\"" + prefix + "narrative.html#Narrative\">.text</a>, <a href=\"" + prefix + "references.html#contained\">.contained</a>, <a href=\"" + prefix + "extensibility.html\">.extension</a>, and <a href=\"" + prefix + "extensibility.html#modifierExtension\">.modifierExtension</a>\r\n");
}
} else {
if (root.typeCode().equals("BackboneElement"))
write(" # from BackboneElement: <a href=\"" + prefix + "extensibility.html\">Element.extension</a>, <a href=\"" + prefix + "extensibility.html\">BackboneElement.modifierextension</a>\r\n");
else
write(" # from Element: <a href=\"" + prefix + "extensibility.html\">Element.extension</a>\r\n");
}
for (ElementDefn elem : root.getElements()) {
generateCoreElem(elem, 1, root.getName(), rn.equals(root.getName()) && resource);
}
write("]\r\n");
}
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