Examples with ElementDefinition org.hl7.fhir.r4.model.ElementDefinition used on opensource projects

Example 81 with ElementDefinition

use of org.hl7.fhir.r4.model.ElementDefinition in project org.hl7.fhir.core by hapifhir.

the class ShExGenerator method genTypeRef.

/**
 * Generate a type reference
 * @param sd Containing structure definition
 * @param ed Containing element definition
 * @param id Element id
 * @param typ Element type
 * @return Type reference string
 */
private String genTypeRef(StructureDefinition sd, ElementDefinition ed, String id, ElementDefinition.TypeRefComponent typ) {
    if (typ.hasProfile()) {
        if (typ.getCode().equals("Reference"))
            return genReference("", typ);
        else if (ProfileUtilities.getChildList(sd, ed).size() > 0) {
            // inline anonymous type - give it a name and factor it out
            innerTypes.add(new ImmutablePair<StructureDefinition, ElementDefinition>(sd, ed));
            return simpleElement(sd, ed, id);
        } else {
            String ref = getTypeName(typ);
            datatypes.add(ref);
            return simpleElement(sd, ed, ref);
        }
    } else if (typ.getCodeElement().getExtensionsByUrl(ToolingExtensions.EXT_RDF_TYPE).size() > 0) {
        String xt = null;
        try {
            xt = typ.getCodeElement().getExtensionString(ToolingExtensions.EXT_RDF_TYPE);
        } catch (FHIRException e) {
            e.printStackTrace();
        }
        // TODO: Remove the next line when the type of token gets switched to string
        // TODO: Add a rdf-type entry for valueInteger to xsd:integer (instead of int)
        ST td_entry = tmplt(PRIMITIVE_ELEMENT_DEFN_TEMPLATE).add("typ", xt.replace("xsd:token", "xsd:string").replace("xsd:int", "xsd:integer"));
        StringBuilder facets = new StringBuilder();
        if (ed.hasMinValue()) {
            Type mv = ed.getMinValue();
            facets.append(tmplt(MINVALUE_TEMPLATE).add("val", TurtleParser.ttlLiteral(mv.primitiveValue(), mv.fhirType())).render());
        }
        if (ed.hasMaxValue()) {
            Type mv = ed.getMaxValue();
            facets.append(tmplt(MAXVALUE_TEMPLATE).add("val", TurtleParser.ttlLiteral(mv.primitiveValue(), mv.fhirType())).render());
        }
        if (ed.hasMaxLength()) {
            int ml = ed.getMaxLength();
            facets.append(tmplt(MAXLENGTH_TEMPLATE).add("val", ml).render());
        }
        if (ed.hasPattern()) {
            Type pat = ed.getPattern();
            facets.append(tmplt(PATTERN_TEMPLATE).add("val", pat.primitiveValue()).render());
        }
        td_entry.add("facets", facets.toString());
        return td_entry.render();
    } else if (typ.getCode() == null) {
        ST primitive_entry = tmplt(PRIMITIVE_ELEMENT_DEFN_TEMPLATE);
        primitive_entry.add("typ", "xsd:string");
        return primitive_entry.render();
    } else if (typ.getCode().equals("xhtml")) {
        return tmplt(XHTML_TYPE_TEMPLATE).render();
    } else {
        datatypes.add(typ.getCode());
        return simpleElement(sd, ed, typ.getCode());
    }
}

Example 82 with ElementDefinition

use of org.hl7.fhir.r4.model.ElementDefinition in project org.hl7.fhir.core by hapifhir.

the class ShExGenerator method genShapeDefinition.

/**
 * Emit a ShEx definition for the supplied StructureDefinition
 * @param sd Structure definition to emit
 * @param top_level True means outermost type, False means recursively called
 * @return ShEx definition
 */
private String genShapeDefinition(StructureDefinition sd, boolean top_level) {
    // xhtml is treated as an atom
    if ("xhtml".equals(sd.getName()) || (completeModel && "Resource".equals(sd.getName())))
        return "";
    ST shape_defn;
    // Resources are either incomplete items or consist of everything that is defined as a resource (completeModel)
    if ("Resource".equals(sd.getName())) {
        shape_defn = tmplt(RESOURCE_SHAPE_TEMPLATE);
        known_resources.add(sd.getName());
    } else {
        shape_defn = tmplt(SHAPE_DEFINITION_TEMPLATE).add("id", sd.getId());
        if (sd.getKind().equals(StructureDefinition.StructureDefinitionKind.RESOURCE)) {
            // || sd.getKind().equals(StructureDefinition.StructureDefinitionKind.COMPLEXTYPE)) {
            known_resources.add(sd.getName());
            ST resource_decl = tmplt(RESOURCE_DECL_TEMPLATE).add("id", sd.getId()).add("root", tmplt(ROOT_TEMPLATE));
            // add("root", top_level ? tmplt(ROOT_TEMPLATE) : "");
            shape_defn.add("resourceDecl", resource_decl.render());
        } else {
            shape_defn.add("resourceDecl", "");
        }
    }
    // Generate the defining elements
    List<String> elements = new ArrayList<String>();
    // Add the additional entries for special types
    String sdn = sd.getName();
    if (sdn.equals("Coding"))
        elements.add(tmplt(CONCEPT_REFERENCE_TEMPLATE).render());
    else if (sdn.equals("CodeableConcept"))
        elements.add(tmplt(CONCEPT_REFERENCES_TEMPLATE).render());
    else if (sdn.equals("Reference"))
        elements.add(tmplt(RESOURCE_LINK_TEMPLATE).render());
    // else if (sdn.equals("Extension"))
    // return tmplt(EXTENSION_TEMPLATE).render();
    String root_comment = null;
    for (ElementDefinition ed : sd.getSnapshot().getElement()) {
        if (!ed.getPath().contains("."))
            root_comment = ed.getShort();
        else if (StringUtils.countMatches(ed.getPath(), ".") == 1 && !"0".equals(ed.getMax())) {
            elements.add(genElementDefinition(sd, ed));
        }
    }
    shape_defn.add("elements", StringUtils.join(elements, "\n"));
    shape_defn.add("comment", root_comment == null ? " " : "# " + root_comment);
    return shape_defn.render();
}

Example 83 with ElementDefinition

use of org.hl7.fhir.r4.model.ElementDefinition in project org.hl7.fhir.core by hapifhir.

the class ShExGenerator method simpleElement.

/**
 * Generate a type reference and optional value set definition
 * @param sd Containing StructureDefinition
 * @param ed Element being defined
 * @param typ Element type
 * @return Type definition
 */
private String simpleElement(StructureDefinition sd, ElementDefinition ed, String typ) {
    String addldef = "";
    ElementDefinition.ElementDefinitionBindingComponent binding = ed.getBinding();
    if (binding.hasStrength() && binding.getStrength() == Enumerations.BindingStrength.REQUIRED && "code".equals(typ)) {
        ValueSet vs = resolveBindingReference(sd, binding.getValueSet());
        if (vs != null) {
            addldef = tmplt(VALUESET_DEFN_TEMPLATE).add("vsn", vsprefix(vs.getUrl())).render();
            required_value_sets.add(vs);
        }
    }
    // TODO: check whether value sets and fixed are mutually exclusive
    if (ed.hasFixed()) {
        addldef = tmplt(FIXED_VALUE_TEMPLATE).add("val", ed.getFixed().primitiveValue()).render();
    }
    return tmplt(SIMPLE_ELEMENT_DEFN_TEMPLATE).add("typ", typ).add("vsdef", addldef).render();
}

Example 84 with ElementDefinition

use of org.hl7.fhir.r4.model.ElementDefinition in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method genElement.

private void genElement(String defPath, HierarchicalTableGenerator gen, List<Row> rows, ElementDefinition element, List<ElementDefinition> all, List<StructureDefinition> profiles, boolean showMissing, String profileBaseFileName, Boolean extensions, boolean snapshot, String corePath, String imagePath, boolean root, boolean logicalModel, boolean isConstraintMode, boolean allInvariants) throws IOException {
    StructureDefinition profile = profiles == null ? null : profiles.get(profiles.size() - 1);
    String s = tail(element.getPath());
    List<ElementDefinition> children = getChildren(all, element);
    boolean isExtension = (s.equals("extension") || s.equals("modifierExtension"));
    if (!snapshot && isExtension && extensions != null && extensions != isExtension)
        return;
    if (!onlyInformationIsMapping(all, element)) {
        Row row = gen.new Row();
        row.setAnchor(element.getPath());
        row.setColor(getRowColor(element, isConstraintMode));
        boolean hasDef = element != null;
        boolean ext = false;
        if (s.equals("extension")) {
            if (element.hasType() && element.getType().get(0).hasProfile() && extensionIsComplex(element.getType().get(0).getProfile()))
                row.setIcon("icon_extension_complex.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX);
            else
                row.setIcon("icon_extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
            ext = true;
        } else if (s.equals("modifierExtension")) {
            if (element.hasType() && element.getType().get(0).hasProfile() && extensionIsComplex(element.getType().get(0).getProfile()))
                row.setIcon("icon_modifier_extension_complex.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX);
            else
                row.setIcon("icon_modifier_extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
        } else if (!hasDef || element.getType().size() == 0)
            row.setIcon("icon_element.gif", HierarchicalTableGenerator.TEXT_ICON_ELEMENT);
        else if (hasDef && element.getType().size() > 1) {
            if (allTypesAre(element.getType(), "Reference"))
                row.setIcon("icon_reference.png", HierarchicalTableGenerator.TEXT_ICON_REFERENCE);
            else
                row.setIcon("icon_choice.gif", HierarchicalTableGenerator.TEXT_ICON_CHOICE);
        } else if (hasDef && element.getType().get(0).getCode() != null && element.getType().get(0).getCode().startsWith("@"))
            row.setIcon("icon_reuse.png", HierarchicalTableGenerator.TEXT_ICON_REUSE);
        else if (hasDef && isPrimitive(element.getType().get(0).getCode()))
            row.setIcon("icon_primitive.png", HierarchicalTableGenerator.TEXT_ICON_PRIMITIVE);
        else if (hasDef && isReference(element.getType().get(0).getCode()))
            row.setIcon("icon_reference.png", HierarchicalTableGenerator.TEXT_ICON_REFERENCE);
        else if (hasDef && isDataType(element.getType().get(0).getCode()))
            row.setIcon("icon_datatype.gif", HierarchicalTableGenerator.TEXT_ICON_DATATYPE);
        else
            row.setIcon("icon_resource.png", HierarchicalTableGenerator.TEXT_ICON_RESOURCE);
        String ref = defPath == null ? null : defPath + element.getId();
        UnusedTracker used = new UnusedTracker();
        used.used = true;
        Cell left = gen.new Cell(null, ref, s, (element.hasSliceName() ? translate("sd.table", "Slice") + " " + element.getSliceName() : "") + (hasDef && element.hasSliceName() ? ": " : "") + (!hasDef ? null : gt(element.getDefinitionElement())), null);
        row.getCells().add(left);
        Cell gc = gen.new Cell();
        row.getCells().add(gc);
        if (element != null && element.getIsModifier())
            checkForNoChange(element.getIsModifierElement(), gc.addStyledText(translate("sd.table", "This element is a modifier element"), "?!", null, null, null, false));
        if (element != null && element.getMustSupport())
            checkForNoChange(element.getMustSupportElement(), gc.addStyledText(translate("sd.table", "This element must be supported"), "S", "white", "red", null, false));
        if (element != null && element.getIsSummary())
            checkForNoChange(element.getIsSummaryElement(), gc.addStyledText(translate("sd.table", "This element is included in summaries"), "\u03A3", null, null, null, false));
        if (element != null && (!element.getConstraint().isEmpty() || !element.getCondition().isEmpty()))
            gc.addStyledText(translate("sd.table", "This element has or is affected by some invariants"), "I", null, null, null, false);
        ExtensionContext extDefn = null;
        if (ext) {
            if (element != null && element.getType().size() == 1 && element.getType().get(0).hasProfile()) {
                extDefn = locateExtension(StructureDefinition.class, element.getType().get(0).getProfile());
                if (extDefn == null) {
                    genCardinality(gen, element, row, hasDef, used, null);
                    row.getCells().add(gen.new Cell(null, null, "?? " + element.getType().get(0).getProfile(), null, null));
                    generateDescription(gen, row, element, null, used.used, profile.getUrl(), element.getType().get(0).getProfile(), profile, corePath, imagePath, root, logicalModel, allInvariants);
                } else {
                    String name = urltail(element.getType().get(0).getProfile());
                    left.getPieces().get(0).setText(name);
                    // left.getPieces().get(0).setReference((String) extDefn.getExtensionStructure().getTag("filename"));
                    left.getPieces().get(0).setHint(translate("sd.table", "Extension URL") + " = " + extDefn.getUrl());
                    genCardinality(gen, element, row, hasDef, used, extDefn.getElement());
                    ElementDefinition valueDefn = extDefn.getExtensionValueDefinition();
                    if (valueDefn != null && !"0".equals(valueDefn.getMax()))
                        genTypes(gen, row, valueDefn, profileBaseFileName, profile, corePath, imagePath);
                    else
                        // if it's complex, we just call it nothing
                        // genTypes(gen, row, extDefn.getSnapshot().getElement().get(0), profileBaseFileName, profile);
                        row.getCells().add(gen.new Cell(null, null, "(" + translate("sd.table", "Complex") + ")", null, null));
                    generateDescription(gen, row, element, extDefn.getElement(), used.used, null, extDefn.getUrl(), profile, corePath, imagePath, root, logicalModel, allInvariants, valueDefn);
                }
            } else {
                genCardinality(gen, element, row, hasDef, used, null);
                if ("0".equals(element.getMax()))
                    row.getCells().add(gen.new Cell());
                else
                    genTypes(gen, row, element, profileBaseFileName, profile, corePath, imagePath);
                generateDescription(gen, row, element, null, used.used, null, null, profile, corePath, imagePath, root, logicalModel, allInvariants);
            }
        } else {
            genCardinality(gen, element, row, hasDef, used, null);
            if (hasDef && !"0".equals(element.getMax()))
                genTypes(gen, row, element, profileBaseFileName, profile, corePath, imagePath);
            else
                row.getCells().add(gen.new Cell());
            generateDescription(gen, row, element, null, used.used, null, null, profile, corePath, imagePath, root, logicalModel, allInvariants);
        }
        if (element.hasSlicing()) {
            if (standardExtensionSlicing(element)) {
                used.used = element.hasType() && element.getType().get(0).hasProfile();
                showMissing = false;
            } else {
                row.setIcon("icon_slice.png", HierarchicalTableGenerator.TEXT_ICON_SLICE);
                row.getCells().get(2).getPieces().clear();
                for (Cell cell : row.getCells()) for (Piece p : cell.getPieces()) {
                    p.addStyle("font-style: italic");
                }
            }
        }
        if (used.used || showMissing)
            rows.add(row);
        if (!used.used && !element.hasSlicing()) {
            for (Cell cell : row.getCells()) for (Piece p : cell.getPieces()) {
                p.setStyle("text-decoration:line-through");
                p.setReference(null);
            }
        } else {
            for (ElementDefinition child : children) if (logicalModel || !child.getPath().endsWith(".id") || (child.getPath().endsWith(".id") && (profile != null) && (profile.getDerivation() == TypeDerivationRule.CONSTRAINT)))
                genElement(defPath, gen, row.getSubRows(), child, all, profiles, showMissing, profileBaseFileName, isExtension, snapshot, corePath, imagePath, false, logicalModel, isConstraintMode, allInvariants);
            if (!snapshot && (extensions == null || !extensions))
                for (ElementDefinition child : children) if (child.getPath().endsWith(".extension") || child.getPath().endsWith(".modifierExtension"))
                    genElement(defPath, gen, row.getSubRows(), child, all, profiles, showMissing, profileBaseFileName, true, false, corePath, imagePath, false, logicalModel, isConstraintMode, allInvariants);
        }
    }
}

Example 85 with ElementDefinition

use of org.hl7.fhir.r4.model.ElementDefinition in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method sliceSummary.

private String sliceSummary(ElementDefinition ed) {
    if (!ed.hasSlicing() && !ed.hasSliceName())
        return "";
    if (ed.hasSliceName())
        return " (slicename = " + ed.getSliceName() + ")";
    StringBuilder b = new StringBuilder();
    boolean first = true;
    for (ElementDefinitionSlicingDiscriminatorComponent d : ed.getSlicing().getDiscriminator()) {
        if (first)
            first = false;
        else
            b.append("|");
        b.append(d.getPath());
    }
    return " (slicing by " + b.toString() + ")";
}