Examples with Enumeration org.hl7.fhir.r4.model.Enumeration used on opensource projects

Example 6 with Enumeration

use of org.hl7.fhir.r4.model.Enumeration in project quality-measure-and-cohort-service by Alvearie.

the class CohortCLITest method testMainMultipleResultTypes.

@Test
public void testMainMultipleResultTypes() throws Exception {
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, "1978-05-06");
    patient.setMaritalStatus(new CodeableConcept(new Coding("http://hl7.org/fhir/ValueSet/marital-status", "M", "Married")));
    mockFhirResourceRetrieval(patient);
    Condition condition = new Condition();
    condition.setSubject(new Reference(patient.getId()));
    condition.setCode(new CodeableConcept(new Coding("http://snomed.com/snomed/2020", "1234", "Dummy")));
    mockFhirResourceRetrieval("/Condition?code%3Ain=http%3A%2F%2Fsome.io%2Fcondition&subject=Patient%2F" + patient.getId() + "&_count=500&_format=json", condition);
    File tmpFile = new File("target/fhir-stub.json");
    ObjectMapper om = new ObjectMapper();
    try (Writer w = new FileWriter(tmpFile)) {
        w.write(om.writeValueAsString(fhirConfig));
    }
    try {
        PrintStream originalOut = System.out;
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        try (PrintStream captureOut = new PrintStream(baos)) {
            System.setOut(captureOut);
            CohortCLI.main(new String[] { "-d", tmpFile.getAbsolutePath(), "-f", "src/test/resources/cql/result-types", "-l", "test_result_types", "-c", patient.getId(), "--enable-terminology-optimization", "--search-page-size", "500" });
        } finally {
            System.setOut(originalOut);
        }
        String output = new String(baos.toByteArray());
        assertTrue(output.contains("Collection: 1"));
        assertTrue(output.contains("Patient/123"));
        assertTrue(output.contains("false"));
        assertTrue(output.contains("DateType[1978-05-06]"));
        assertTrue(output.contains("Enumeration[female]"));
        String[] lines = output.split("\r?\n");
        assertEquals(output, 9, lines.length);
        System.out.println(output);
    } finally {
        tmpFile.delete();
    }
}

Example 7 with Enumeration

use of org.hl7.fhir.r4.model.Enumeration in project openmrs-module-fhir2 by openmrs.

the class AllergyIntoleranceFhirResourceProviderIntegrationTest method shouldUpdateExistingAllergyAsXML.

@Test
public void shouldUpdateExistingAllergyAsXML() throws Exception {
    // get the existing record
    MockHttpServletResponse response = get("/AllergyIntolerance/" + ALLERGY_UUID).accept(FhirMediaTypes.XML).go();
    AllergyIntolerance allergy = readResponse(response);
    // update the existing record
    Enumeration<AllergyIntolerance.AllergyIntoleranceCategory> category = new Enumeration<>(new AllergyIntolerance.AllergyIntoleranceCategoryEnumFactory());
    category.setValue(AllergyIntolerance.AllergyIntoleranceCategory.ENVIRONMENT);
    allergy.getCategory().set(0, category);
    // send the update to the server
    response = put("/AllergyIntolerance/" + ALLERGY_UUID).xmlContent(toXML(allergy)).accept(FhirMediaTypes.XML).go();
    assertThat(response, isOk());
    assertThat(response.getContentType(), is(FhirMediaTypes.XML.toString()));
    assertThat(response.getContentAsString(), notNullValue());
    // read the updated record
    AllergyIntolerance updatedAllergy = readResponse(response);
    assertThat(updatedAllergy, notNullValue());
    assertThat(updatedAllergy.getIdElement().getIdPart(), equalTo(ALLERGY_UUID));
    assertThat(updatedAllergy.getCategory().get(0).getValue().toCode(), equalTo("environment"));
    assertThat(updatedAllergy, validResource());
    // double-check the record returned via get
    response = get("/AllergyIntolerance/" + ALLERGY_UUID).accept(FhirMediaTypes.XML).go();
    AllergyIntolerance reReadAllergy = readResponse(response);
    assertThat(reReadAllergy.getCategory().get(0).getValue().toCode(), equalTo("environment"));
}

Example 8 with Enumeration

use of org.hl7.fhir.r4.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class ImplementationGuide30_40 method convertImplementationGuide.

public static org.hl7.fhir.dstu3.model.ImplementationGuide convertImplementationGuide(org.hl7.fhir.r4.model.ImplementationGuide src) throws FHIRException {
    if (src == null)
        return null;
    org.hl7.fhir.dstu3.model.ImplementationGuide tgt = new org.hl7.fhir.dstu3.model.ImplementationGuide();
    ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().copyDomainResource(src, tgt);
    if (src.hasUrl())
        tgt.setUrlElement(Uri30_40.convertUri(src.getUrlElement()));
    if (src.hasVersion())
        tgt.setVersionElement(String30_40.convertString(src.getVersionElement()));
    if (src.hasName())
        tgt.setNameElement(String30_40.convertString(src.getNameElement()));
    if (src.hasStatus())
        tgt.setStatusElement(Enumerations30_40.convertPublicationStatus(src.getStatusElement()));
    if (src.hasExperimental())
        tgt.setExperimentalElement(Boolean30_40.convertBoolean(src.getExperimentalElement()));
    if (src.hasDateElement())
        tgt.setDateElement(DateTime30_40.convertDateTime(src.getDateElement()));
    if (src.hasPublisher())
        tgt.setPublisherElement(String30_40.convertString(src.getPublisherElement()));
    for (org.hl7.fhir.r4.model.ContactDetail t : src.getContact()) tgt.addContact(ContactDetail30_40.convertContactDetail(t));
    if (src.hasDescription())
        tgt.setDescriptionElement(MarkDown30_40.convertMarkdown(src.getDescriptionElement()));
    for (org.hl7.fhir.r4.model.UsageContext t : src.getUseContext()) tgt.addUseContext(Timing30_40.convertUsageContext(t));
    for (org.hl7.fhir.r4.model.CodeableConcept t : src.getJurisdiction()) tgt.addJurisdiction(CodeableConcept30_40.convertCodeableConcept(t));
    if (src.hasCopyright())
        tgt.setCopyrightElement(MarkDown30_40.convertMarkdown(src.getCopyrightElement()));
    if (src.hasFhirVersion())
        for (Enumeration<org.hl7.fhir.r4.model.Enumerations.FHIRVersion> v : src.getFhirVersion()) {
            tgt.setFhirVersion(v.asStringValue());
            break;
        }
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideDependsOnComponent t : src.getDependsOn()) tgt.addDependency(convertImplementationGuideDependencyComponent(t));
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideDefinitionGroupingComponent t : src.getDefinition().getGrouping()) tgt.addPackage(convertImplementationGuidePackageComponent(t));
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideDefinitionResourceComponent t : src.getDefinition().getResource()) {
        findPackage(tgt.getPackage(), t.getGroupingId()).addResource(convertImplementationGuidePackageResourceComponent(t));
    }
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideGlobalComponent t : src.getGlobal()) tgt.addGlobal(convertImplementationGuideGlobalComponent(t));
    if (src.getDefinition().hasPage())
        tgt.setPage(convertImplementationGuidePageComponent(src.getDefinition().getPage()));
    return tgt;
}

Example 9 with Enumeration

use of org.hl7.fhir.r4.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class ISO21090Importer method generateValueSet.

private void generateValueSet(EnumValueSet evs) throws Exception {
    ValueSet bvs = ctxt.fetchResource(ValueSet.class, evs.getTemplate());
    if (bvs == null)
        throw new Exception("Did not find template value set " + evs.getTemplate());
    ValueSet vs = bvs.copy();
    vs.getCompose().getInclude().clear();
    vs.getIdentifier().clear();
    vs.setName("ISO 20190 " + evs.getName() + " Enumeration");
    vs.setId(evs.getName());
    vs.setUrl("http://hl7.org/fhir/iso21090/ValueSet/" + vs.getId());
    vs.setDate(new Date());
    vs.setExperimental(false);
    ConceptSetComponent inc = vs.getCompose().addInclude().setSystem(evs.getSystem());
    for (String code : evs.getCodes()) {
        inc.addConcept().setCode(code);
    }
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "iso21090\\ValueSet-" + evs.getName() + ".xml")), vs);
}

Example 10 with Enumeration

use of org.hl7.fhir.r4.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        x.addText("Extensions: Todo");
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu2.model.DateType)
        x.addText(((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.addTag("a").attribute("href", tr.getReference());
                else
                    c = x.addTag("a").attribute("href", r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null) {
                c.addText(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.addText("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
}