Examples with FINAL org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL used on opensource projects

Example 91 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class ConformanceProvider method buildSecurity.

@Nonnull
private CapabilityStatementRestSecurityComponent buildSecurity() {
    final CapabilityStatementRestSecurityComponent security = new CapabilityStatementRestSecurityComponent();
    security.setCors(true);
    if (configuration.getAuth().isEnabled()) {
        final OidcConfiguration checkedConfig = checkPresent(oidcConfiguration);
        final CodeableConcept smart = new CodeableConcept(new Coding(RESTFUL_SECURITY_URI, RESTFUL_SECURITY_CODE, RESTFUL_SECURITY_CODE));
        smart.setText("OAuth2 using SMART-on-FHIR profile (see http://docs.smarthealthit.org)");
        security.getService().add(smart);
        final Optional<String> authUrl = checkedConfig.get(AUTH_URL);
        final Optional<String> tokenUrl = checkedConfig.get(TOKEN_URL);
        final Optional<String> revokeUrl = checkedConfig.get(REVOKE_URL);
        if (authUrl.isPresent() || tokenUrl.isPresent() || revokeUrl.isPresent()) {
            final Extension oauthUris = new Extension(SMART_OAUTH_URI);
            authUrl.ifPresent(url -> oauthUris.addExtension("authorize", new UriType(url)));
            tokenUrl.ifPresent(url -> oauthUris.addExtension("token", new UriType(url)));
            revokeUrl.ifPresent(url -> oauthUris.addExtension("revoke", new UriType(url)));
            security.addExtension(oauthUris);
        }
    }
    return security;
}

Example 92 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class ConformanceProvider method getServerConformance.

@Override
@Metadata(cacheMillis = 0)
public CapabilityStatement getServerConformance(@Nullable final HttpServletRequest httpServletRequest, @Nullable final RequestDetails requestDetails) {
    log.debug("Received request for server capabilities");
    final CapabilityStatement capabilityStatement = new CapabilityStatement();
    capabilityStatement.setUrl(getCapabilityUri());
    capabilityStatement.setVersion(version.getBuildVersion().orElse(UNKNOWN_VERSION));
    capabilityStatement.setTitle("Pathling FHIR API");
    capabilityStatement.setName("pathling-fhir-api");
    capabilityStatement.setStatus(PublicationStatus.ACTIVE);
    capabilityStatement.setExperimental(true);
    capabilityStatement.setPublisher("Australian e-Health Research Centre, CSIRO");
    capabilityStatement.setCopyright("Dedicated to the public domain via CC0: https://creativecommons.org/publicdomain/zero/1.0/");
    capabilityStatement.setKind(CapabilityStatementKind.INSTANCE);
    final CapabilityStatementSoftwareComponent software = new CapabilityStatementSoftwareComponent(new StringType("Pathling"));
    software.setVersion(version.getDescriptiveVersion().orElse(UNKNOWN_VERSION));
    capabilityStatement.setSoftware(software);
    final CapabilityStatementImplementationComponent implementation = new CapabilityStatementImplementationComponent(new StringType(configuration.getImplementationDescription()));
    final Optional<String> serverBase = getServerBase(Optional.ofNullable(httpServletRequest));
    serverBase.ifPresent(implementation::setUrl);
    capabilityStatement.setImplementation(implementation);
    capabilityStatement.setFhirVersion(FHIRVersion._4_0_1);
    capabilityStatement.setFormat(Arrays.asList(new CodeType("json"), new CodeType("xml")));
    capabilityStatement.setRest(buildRestComponent());
    return capabilityStatement;
}

Example 93 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class FhirServer method buildUpdateProviders.

@Nonnull
private List<IResourceProvider> buildUpdateProviders() {
    final List<IResourceProvider> providers = new ArrayList<>();
    for (final ResourceType resourceType : ResourceType.values()) {
        final IResourceProvider updateProvider = resourceProviderFactory.createUpdateResourceProvider(resourceType);
        providers.add(updateProvider);
    }
    return providers;
}

Example 94 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class FhirServer method resourceTypeFromClass.

/**
 * @param resourceClass a class that extends {@link IBaseResource}
 * @return a {@link Enumerations.ResourceType} enum
 */
@Nonnull
public static Enumerations.ResourceType resourceTypeFromClass(@Nonnull final Class<? extends IBaseResource> resourceClass) {
    try {
        final Constructor<? extends IBaseResource> constructor = resourceClass.getConstructor();
        final IBaseResource instance = constructor.newInstance();
        return Enumerations.ResourceType.fromCode(instance.fhirType());
    } catch (final NoSuchMethodException | IllegalAccessException | InstantiationException | InvocationTargetException e) {
        throw new RuntimeException("Problem determining FHIR type from resource class", e);
    }
}

Example 95 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class OperationDefinitionProvider method getOperationDefinitionById.

/**
 * Handles all read requests to the OperationDefinition resource.
 *
 * @param id the ID of the desired OperationDefinition
 * @return an {@link OperationDefinition} resource
 */
@Read
@SuppressWarnings("unused")
public OperationDefinition getOperationDefinitionById(@Nullable @IdParam final IIdType id) {
    checkUserInput(id != null, "Missing ID parameter");
    final String idString = id.getValue();
    final OperationDefinition resource = resources.get(idString);
    if (resource == null) {
        throw new ResourceNotFoundError("OperationDefinition not found: " + idString);
    }
    return resource;
}