Examples with FINAL org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL used on opensource projects

Example 86 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class TestData method newMedication.

/**
 * Returns a FHIR medication to be contained to a medication request for testing purposes.
 */
public static Medication newMedication() {
    final Medication medication = new Medication();
    medication.setId("test-med");
    final MedicationIngredientComponent ingredient = new MedicationIngredientComponent();
    final CodeableConcept item = new CodeableConcept();
    item.addCoding().setSystem("test/ingredient/system").setCode("test-code");
    ingredient.setItem(item);
    medication.addIngredient(ingredient);
    return medication;
}

Example 87 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class QueryHelpers method join.

/**
 * Joins any number of {@link FhirPath} expressions, using equality between their respective
 * resource ID columns.
 *
 * @param parserContext the current {@link ParserContext}
 * @param fhirPaths a list of {@link FhirPath} expressions
 * @param joinType a {@link JoinType}
 * @return a new {@link Dataset}
 */
@Nonnull
public static Dataset<Row> join(@Nonnull final ParserContext parserContext, @Nonnull final List<FhirPath> fhirPaths, @Nonnull final JoinType joinType) {
    checkArgument(fhirPaths.size() > 1, "fhirPaths must contain more than one FhirPath");
    final FhirPath left = fhirPaths.get(0);
    final List<FhirPath> joinTargets = fhirPaths.subList(1, fhirPaths.size());
    // Only non-literal paths will trigger a join.
    final List<FhirPath> nonLiteralTargets = joinTargets.stream().filter(t -> t instanceof NonLiteralPath).collect(Collectors.toList());
    if (left instanceof NonLiteralPath && nonLiteralTargets.isEmpty()) {
        // to join.
        return left.getDataset();
    } else if (left instanceof LiteralPath && !nonLiteralTargets.isEmpty()) {
        // right without any need to join.
        return nonLiteralTargets.get(0).getDataset();
    }
    Dataset<Row> dataset = left.getDataset();
    final List<Column> groupingColumns = parserContext.getGroupingColumns();
    final Column idColumn = parserContext.getInputContext().getIdColumn();
    final List<Column> leftColumns = checkColumnsAndFallback(left.getDataset(), groupingColumns, idColumn);
    for (final FhirPath right : nonLiteralTargets) {
        final List<Column> resolvedGroupingColumns = checkColumnsAndFallback(right.getDataset(), leftColumns, idColumn);
        dataset = join(dataset, resolvedGroupingColumns, right.getDataset(), resolvedGroupingColumns, joinType);
    }
    return dataset;
}

Example 88 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class ExtractResponse method toParameters.

/**
 * Converts this to a {@link Parameters} resource, based on the definition of the result of the
 * "extract" operation within the OperationDefinition.
 *
 * @return a new {@link Parameters} object
 */
public Parameters toParameters() {
    final Parameters parameters = new Parameters();
    final ParametersParameterComponent urlParameter = new ParametersParameterComponent();
    urlParameter.setName("url");
    urlParameter.setValue(new UrlType(url));
    parameters.getParameter().add(urlParameter);
    return parameters;
}

Example 89 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class ConformanceProvider method buildResources.

@Nonnull
private List<CapabilityStatementRestResourceComponent> buildResources() {
    final List<CapabilityStatementRestResourceComponent> resources = new ArrayList<>();
    final Set<ResourceType> supported = FhirServer.supportedResourceTypes();
    final Set<ResourceType> supportedResourceTypes = supported.isEmpty() ? EnumSet.noneOf(ResourceType.class) : EnumSet.copyOf(supported);
    for (final ResourceType resourceType : supportedResourceTypes) {
        final CapabilityStatementRestResourceComponent resource = new CapabilityStatementRestResourceComponent(new CodeType(resourceType.toCode()));
        resource.setProfile(FHIR_RESOURCE_BASE + resourceType.toCode());
        // Add the search operation to all resources.
        final ResourceInteractionComponent search = new ResourceInteractionComponent();
        search.setCode(TypeRestfulInteraction.SEARCHTYPE);
        resource.getInteraction().add(search);
        // Add the create and update operations to all resources.
        final ResourceInteractionComponent create = new ResourceInteractionComponent();
        final ResourceInteractionComponent update = new ResourceInteractionComponent();
        create.setCode(TypeRestfulInteraction.CREATE);
        update.setCode(TypeRestfulInteraction.UPDATE);
        resource.getInteraction().add(create);
        resource.getInteraction().add(update);
        // Add the `aggregate` operation to all resources.
        final CanonicalType aggregateOperationUri = new CanonicalType(getOperationUri("aggregate"));
        final CapabilityStatementRestResourceOperationComponent aggregateOperation = new CapabilityStatementRestResourceOperationComponent(new StringType("aggregate"), aggregateOperationUri);
        resource.addOperation(aggregateOperation);
        // Add the `fhirPath` search parameter to all resources.
        final CapabilityStatementRestResourceOperationComponent searchOperation = new CapabilityStatementRestResourceOperationComponent();
        searchOperation.setName("fhirPath");
        searchOperation.setDefinition(getOperationUri("search"));
        resource.addOperation(searchOperation);
        resources.add(resource);
    }
    // Add the read operation to the OperationDefinition resource.
    final String opDefCode = ResourceType.OPERATIONDEFINITION.toCode();
    final CapabilityStatementRestResourceComponent opDefResource = new CapabilityStatementRestResourceComponent(new CodeType(opDefCode));
    opDefResource.setProfile(FHIR_RESOURCE_BASE + opDefCode);
    final ResourceInteractionComponent readInteraction = new ResourceInteractionComponent();
    readInteraction.setCode(TypeRestfulInteraction.READ);
    opDefResource.addInteraction(readInteraction);
    resources.add(opDefResource);
    return resources;
}

Example 90 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project pathling by aehrc.

the class ConformanceProvider method buildRestComponent.

@Nonnull
private List<CapabilityStatementRestComponent> buildRestComponent() {
    final List<CapabilityStatementRestComponent> rest = new ArrayList<>();
    final CapabilityStatementRestComponent server = new CapabilityStatementRestComponent();
    server.setMode(RestfulCapabilityMode.SERVER);
    server.setSecurity(buildSecurity());
    server.setResource(buildResources());
    server.setOperation(buildOperations());
    server.setInteraction(buildSystemLevelInteractions());
    rest.add(server);
    return rest;
}