Examples with ValueSet org.hl7.fhir.r4.model.ValueSet used on opensource projects

Example 36 with ValueSet

use of org.hl7.fhir.r4.model.ValueSet in project kindling by HL7.

the class TerminologyNotesGenerator method describeBinding.

public static String describeBinding(String prefix, ElementDefinitionBindingComponent def, PageProcessor page) throws Exception {
    if (!def.hasValueSet())
        return def.getDescription();
    String ref = def.getValueSet();
    ValueSet vs = page.getValueSets().get(ref);
    if (vs != null) {
        String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
        return def.getDescription() + "<br/>" + conf(def) + "<a href=\"" + (Utilities.isAbsoluteUrl(pp) ? "" : prefix) + pp.replace(File.separatorChar, '/') + "\">" + vs.present() + "</a>" + confTail(def);
    }
    if (ref.startsWith("http:") || ref.startsWith("https:"))
        return def.getDescription() + "<br/>" + conf(def) + " <a href=\"" + ref + "\">" + ref + "</a>" + confTail(def);
    else
        return def.getDescription() + "<br/>" + conf(def) + " ?? Broken Reference to " + ref + " ??" + confTail(def);
}

Example 37 with ValueSet

use of org.hl7.fhir.r4.model.ValueSet in project kindling by HL7.

the class TerminologyNotesGenerator method gen.

private void gen(String prefix, Map<BindingSpecification, List<CDUsage>> txusages2) throws Exception {
    List<BindingSpecification> cds = new ArrayList<BindingSpecification>();
    cds.addAll(txusages.keySet());
    if (cds.size() == 0)
        return;
    Collections.sort(cds, new MyCompare());
    if (noHeader)
        write("<p>\r\n<b>Terminology Bindings</b>\r\n</p>\r\n");
    else
        write("<h3>\r\nTerminology Bindings\r\n</h3>\r\n");
    // 1. new form
    write("<table class=\"grid\">\r\n");
    write(" <tr><th>Path</th><th>Definition</th><th>Type</th><th>Reference</th></tr>\r\n");
    for (BindingSpecification cd : cds) {
        String path;
        List<CDUsage> list = txusages.get(cd);
        for (int i = 2; i < list.size(); i++) {
            if (!matchesTypes(list.get(i).element.typeCodeNoParams(), list.get(1).element.typeCodeNoParams()))
                throw new Exception("Mixed types on one concept domain in one type - not yet supported by the build process for binding " + cd.getName() + " (" + list.get(i).element.typeCode() + " vs " + list.get(1).element.typeCode() + ")");
        }
        String name = cd.getValueSet() != null ? cd.getValueSet().present() : cd.getName();
        write(" <tr><td valign=\"top\" title=\"" + name + "\">");
        boolean first = true;
        for (int i = 1; i < list.size(); i++) {
            if (!first)
                write("<br/>");
            first = false;
            write(list.get(i).path);
        }
        write(" </td>");
        write("<td valign=\"top\">" + Utilities.escapeXml(cd.getDefinition()) + "</td>");
        if (cd.getBinding() == BindingMethod.Unbound)
            write("<td>Unknown</td><td valign=\"top\">No details provided yet</td>");
        else {
            if (cd.hasMax()) {
                ValueSet vs = cd.getMaxValueSet();
                if (vs == null) {
                    write("<td><a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a>, but limited to <a href=\"" + cd.getMaxReference() + "\">" + cd.getMaxReference() + "</a></td>");
                } else {
                    String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                    write("<td><a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a>, but limited to <a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + vs.getName() + "</a></td>");
                }
            } else
                write("<td><a href=\"" + prefix + "terminologies.html#" + cd.getStrength().toCode() + "\">" + cd.getStrength().getDisplay() + "</a></td>");
            write("<td valign=\"top\">");
            if (cd.getBinding() == BindingSpecification.BindingMethod.Special) {
                if (name.equals("MessageEvent"))
                    write("<a href=\"" + prefix + "valueset-message-events.html\">Message Events</a>");
                else if (name.equals("ResourceType"))
                    write("<a href=\"" + prefix + "valueset-resource-types.html\">Resource Types</a>");
                else if (name.equals("DataType"))
                    write("<a href=\"" + prefix + "valueset-data-types.html\">Data Types</a>");
                else if (name.equals("FHIRDefinedType"))
                    write("<a href=\"" + prefix + "valueset-defined-types.html\">Defined Types</a>");
                else if (name.equals("FHIRAllTypes"))
                    write("<a href=\"" + prefix + "valueset-all-types.html\">All Types</a>");
                else
                    throw new Exception("Unknown special type " + name);
            } else if (cd.getValueSet() != null) {
                ValueSet vs = cd.getValueSet();
                String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                if (pp == null)
                    throw new Exception("unknown path on " + cd.getReference());
                write("<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + vs.getName() + "</a><!-- b -->");
            } else if (cd.getBinding() == BindingSpecification.BindingMethod.ValueSet) {
                if (Utilities.noString(cd.getReference()))
                    write("??");
                else if (cd.getReference().startsWith("valueset-"))
                    write("<a href=\"" + prefix + cd.getReference() + ".html\">http://hl7.org/fhir/ValueSet/" + cd.getReference().substring(9) + "</a><!-- a -->");
                else if (cd.getReference().startsWith("http://hl7.org/fhir")) {
                    if (cd.getReference().startsWith("http://terminology.hl7.org/ValueSet/v3-")) {
                        ValueSet vs = page.getValueSets().get(cd.getReference());
                        String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                        if (pp == null)
                            throw new Exception("unknown path on " + cd.getReference());
                        write("<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + cd.getReference() + "</a><!-- b -->");
                    } else if (cd.getReference().startsWith("http://terminology.hl7.org/ValueSet/v2-")) {
                        ValueSet vs = page.getValueSets().get(cd.getReference());
                        String pp = vs.hasUserData("external.url") ? vs.getUserString("external.url") : vs.getUserString("path");
                        write("<a href=\"" + prefix + pp.replace(File.separatorChar, '/') + "\">" + cd.getReference() + "</a><!-- c -->");
                    } else if (cd.getReference().startsWith("http://hl7.org/fhir/ValueSet/")) {
                        String ref = getBindingLink(cd);
                        write("<a href=\"" + prefix + ref + "\">" + cd.getReference() + "</a><!-- d -->");
                    // BindingSpecification bs1 = page.getDefinitions().getBindingByURL(cd.getReference());
                    // if (bs1 != null)
                    // write("<a href=\""+cd.getReference().substring(23)+".html\">"+cd.getReference()+"</a><!-- d -->");
                    // else
                    // write("<a href=\"valueset-"+cd.getReference().substring(23)+".html\">"+cd.getReference()+"</a><!-- d -->");
                    } else
                        throw new Exception("Internal reference " + cd.getReference() + " not handled yet");
                } else if (cd.getReference().startsWith("http:"))
                    write("<a href=\"" + cd.getReference() + "\">" + cd.getReference() + "</a><!-- e -->");
                else
                    write("<a href=\"" + prefix + "valueset-" + cd.getReference() + ".html\">http://hl7.org/fhir/" + cd.getReference() + "</a><!-- e -->");
            } else if (cd.getBinding() == BindingSpecification.BindingMethod.CodeList) {
                write("<a href=\"" + prefix + "valueset-" + cd.getReference().substring(1) + ".html\">http://hl7.org/fhir/" + cd.getReference().substring(1) + "</a><!-- f -->");
            }
            write("</td>");
        }
        write(" </tr>\r\n");
    }
    write("</table>\r\n<p> </p>\r\n");
}

Example 38 with ValueSet

use of org.hl7.fhir.r4.model.ValueSet in project kindling by HL7.

the class CodeListToValueSetParser method generateConceptMapV2.

private void generateConceptMapV2(String v2map, ValueSet vs, CodeSystem cs) throws Exception {
    ConceptMap cm = new ConceptMap();
    cm.setId("cm-" + vs.getId() + "-v2");
    cm.setVersion(version);
    cm.setUserData("path", cm.getId() + ".html");
    cm.setUserData("generate", true);
    cm.setUrl("http://hl7.org/fhir/ConceptMap/" + cm.getId());
    cm.setName("v2." + vs.getName());
    cm.setTitle("v2 map for " + vs.present());
    cm.setPublisher("HL7 (FHIR Project)");
    for (ContactDetail cc : vs.getContact()) {
        ContactDetail cd = cm.addContact();
        cd.setName(cc.getName());
        for (ContactPoint ccs : cc.getTelecom()) cd.addTelecom(ccs.copy());
    }
    cm.setCopyright(vs.getCopyright());
    // until we publish DSTU, then .review
    cm.setStatus(vs.getStatus());
    cm.setDate(vs.getDate());
    cm.setSource(Factory.newCanonical(vs.getUrl()));
    cm.setTarget(Factory.newCanonical(v2map));
    if (cs != null)
        processV2ConceptDefs(cm, cs.getUrl(), cs.getConcept());
    for (ConceptSetComponent cc : vs.getCompose().getInclude()) for (ConceptReferenceComponent c : cc.getConcept()) {
        processV2Map(cm, cc.getSystem(), c.getCode(), c.getUserString("v2"));
    }
    maps.see(cm, packageInfo);
}

Example 39 with ValueSet

use of org.hl7.fhir.r4.model.ValueSet in project kindling by HL7.

the class CodeSystemConvertor method convert.

public void convert(IParser p, ValueSet vs, String name, PackageVersion packageInfo) throws Exception {
    String nname = name.replace("valueset-", "codesystem-");
    if (nname.equals(name))
        nname = Utilities.changeFileExt(name, "-cs.xml");
    if (new File(nname).exists()) {
        FileInputStream input = new FileInputStream(nname);
        CodeSystem cs = CodeSystemUtilities.makeShareable((CodeSystem) p.parse(input));
        if (!cs.hasTitle())
            cs.setTitle(Utilities.capitalize(Utilities.unCamelCase(cs.getName())));
        populate(cs, vs);
        // if (codeSystems.containsKey(cs.getUrl()))
        // throw new Exception("Duplicate Code System: "+cs.getUrl());
        codeSystems.see(cs, packageInfo);
    }
}

Example 40 with ValueSet

use of org.hl7.fhir.r4.model.ValueSet in project kindling by HL7.

the class CodeSystemConvertor method populate.

public static void populate(CodeSystem cs, ValueSet vs) {
    if (!vs.hasName())
        throw new Error("No name vs " + vs.getUrl());
    if (!vs.hasDescription())
        throw new Error("No description vs " + vs.getUrl());
    if (cs.getUserData("conv-vs") != null)
        throw new Error("This code system has already been converted");
    cs.setUserData("conv-vs", "done");
    vs.setUserData("cs", cs);
    if (vs.hasUserData("filename"))
        cs.setUserData("filename", vs.getUserString("filename").replace("valueset-", "codesystem-"));
    if (vs.hasUserData("path"))
        cs.setUserData("path", vs.getUserString("path").replace("valueset-", "codesystem-"));
    if (vs.hasUserData("committee"))
        cs.setUserData("committee", vs.getUserData("committee"));
    cs.setId(vs.getId());
    cs.setVersion(vs.getVersion());
    cs.setName(vs.getName());
    cs.setTitle(vs.getTitle());
    cs.setStatus(vs.getStatus());
    cs.setExperimentalElement(vs.getExperimentalElement());
    cs.setPublisher(vs.getPublisher());
    for (ContactDetail csrc : vs.getContact()) {
        ContactDetail ctgt = cs.addContact();
        ctgt.setName(csrc.getName());
        for (ContactPoint cc : csrc.getTelecom()) ctgt.addTelecom(cc);
    }
    cs.setDate(vs.getDate());
    cs.setDescription(vs.getDescription());
    cs.getDescriptionElement().getExtension().addAll(vs.getDescriptionElement().getExtension());
    for (UsageContext cc : vs.getUseContext()) cs.addUseContext(cc);
    cs.setPurpose(vs.getPurpose());
    cs.setCopyright(vs.getCopyright());
    if (vs.hasCompose() && vs.getCompose().getInclude().size() == 1 && vs.getCompose().getExclude().size() == 0 && vs.getCompose().getInclude().get(0).getSystem().equals(cs.getUrl()) && !vs.getCompose().getInclude().get(0).hasValueSet() && !vs.getCompose().getInclude().get(0).hasConcept() && !vs.getCompose().getInclude().get(0).hasFilter())
        cs.setValueSet(vs.getUrl());
    vs.setImmutable(true);
}