Examples with CanonicalResource org.hl7.fhir.r4b.model.CanonicalResource used on opensource projects

Example 46 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class R4BToR5Loader method loadBundle.

@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r4 = null;
    if (isJson)
        r4 = new JsonParser().parse(stream);
    else
        r4 = new XmlParser().parse(stream);
    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_40_50.convertResource(r4, advisor);
    Bundle b;
    if (r5 instanceof Bundle)
        b = (Bundle) r5;
    else {
        b = new Bundle();
        b.setId(UUID.randomUUID().toString().toLowerCase());
        b.setType(BundleType.COLLECTION);
        b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
    }
    for (CodeSystem cs : advisor.getCslist()) {
        BundleEntryComponent be = b.addEntry();
        be.setFullUrl(cs.getUrl());
        be.setResource(cs);
    }
    if (killPrimitives) {
        List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
                    remove.add(be);
            }
        }
        b.getEntry().removeAll(remove);
    }
    if (patchUrls) {
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                sd.setUrl(sd.getUrl().replace(URL_BASE, URL_R4));
                sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
                for (ElementDefinition ed : sd.getSnapshot().getElement()) patchUrl(ed);
                for (ElementDefinition ed : sd.getDifferential().getElement()) patchUrl(ed);
            }
        }
    }
    return b;
}

Example 47 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class R4ToR5Loader method loadBundle.

@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r4 = null;
    if (isJson)
        r4 = new JsonParser().parse(stream);
    else
        r4 = new XmlParser().parse(stream);
    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_40_50.convertResource(r4, advisor);
    Bundle b;
    if (r5 instanceof Bundle)
        b = (Bundle) r5;
    else {
        b = new Bundle();
        b.setId(UUID.randomUUID().toString().toLowerCase());
        b.setType(BundleType.COLLECTION);
        b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
    }
    for (CodeSystem cs : advisor.getCslist()) {
        BundleEntryComponent be = b.addEntry();
        be.setFullUrl(cs.getUrl());
        be.setResource(cs);
    }
    if (killPrimitives) {
        List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
                    remove.add(be);
            }
        }
        b.getEntry().removeAll(remove);
    }
    if (patchUrls) {
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                sd.setUrl(sd.getUrl().replace(URL_BASE, URL_R4));
                sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
                for (ElementDefinition ed : sd.getSnapshot().getElement()) patchUrl(ed);
                for (ElementDefinition ed : sd.getDifferential().getElement()) patchUrl(ed);
            }
        }
    }
    return b;
}

Example 48 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class R2016MayToR5Loader method loadBundle.

@Override
public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
    Resource r2016may = null;
    if (isJson)
        r2016may = new JsonParser().parse(stream);
    else
        r2016may = new XmlParser().parse(stream);
    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_14_50.convertResource(r2016may, advisor);
    Bundle b;
    if (r5 instanceof Bundle)
        b = (Bundle) r5;
    else {
        b = new Bundle();
        b.setId(UUID.randomUUID().toString().toLowerCase());
        b.setType(BundleType.COLLECTION);
        b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
    }
    for (CodeSystem cs : advisor.getCslist()) {
        BundleEntryComponent be = b.addEntry();
        be.setFullUrl(cs.getUrl());
        be.setResource(cs);
    }
    if (killPrimitives) {
        List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
        for (BundleEntryComponent be : b.getEntry()) {
            if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) be.getResource();
                if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
                    remove.add(be);
            }
        }
        b.getEntry().removeAll(remove);
    }
    for (BundleEntryComponent be : b.getEntry()) {
        if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
            StructureDefinition sd = (StructureDefinition) be.getResource();
            new ProfileUtilities(null, null, null).setIds(sd, false);
            if (patchUrls) {
                sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2016MAY));
                sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
            }
        }
    }
    return b;
}

Example 49 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class CanonicalResourceComparer method compareCodeList.

protected void compareCodeList(String name, List<CodeType> left, List<CodeType> right, Map<String, StructuralMatch<String>> comp, IssueSeverity level, CanonicalResourceComparison<? extends CanonicalResource> res, List<CodeType> union, List<CodeType> intersection) {
    List<CodeType> matchR = new ArrayList<>();
    StructuralMatch<String> combined = new StructuralMatch<String>();
    for (CodeType l : left) {
        CodeType r = findCodeInList(right, l);
        if (r == null) {
            union.add(l);
            combined.getChildren().add(new StructuralMatch<String>(l.getValue(), vm(IssueSeverity.INFORMATION, "Removed the item '" + l.getValue() + "'", fhirType() + "." + name, res.getMessages())));
        } else {
            matchR.add(r);
            union.add(r);
            intersection.add(r);
            StructuralMatch<String> sm = new StructuralMatch<String>(l.getValue(), r.getValue());
            combined.getChildren().add(sm);
        }
    }
    for (CodeType r : right) {
        if (!matchR.contains(r)) {
            union.add(r);
            combined.getChildren().add(new StructuralMatch<String>(vm(IssueSeverity.INFORMATION, "Added the item '" + r.getValue() + "'", fhirType() + "." + name, res.getMessages()), r.getValue()));
        }
    }
    comp.put(name, combined);
}

Example 50 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class CanonicalResourceComparer method comparePrimitives.

@SuppressWarnings("rawtypes")
protected void comparePrimitives(String name, PrimitiveType l, PrimitiveType r, Map<String, StructuralMatch<String>> comp, IssueSeverity level, CanonicalResourceComparison<? extends CanonicalResource> res) {
    StructuralMatch<String> match = null;
    if (l.isEmpty() && r.isEmpty()) {
        match = new StructuralMatch<>(null, null, null);
    } else if (l.isEmpty()) {
        match = new StructuralMatch<>(null, r.primitiveValue(), vmI(IssueSeverity.INFORMATION, "Added the item '" + r.primitiveValue() + "'", fhirType() + "." + name));
    } else if (r.isEmpty()) {
        match = new StructuralMatch<>(l.primitiveValue(), null, vmI(IssueSeverity.INFORMATION, "Removed the item '" + l.primitiveValue() + "'", fhirType() + "." + name));
    } else if (!l.hasValue() && !r.hasValue()) {
        match = new StructuralMatch<>(null, null, vmI(IssueSeverity.INFORMATION, "No Value", fhirType() + "." + name));
    } else if (!l.hasValue()) {
        match = new StructuralMatch<>(null, r.primitiveValue(), vmI(IssueSeverity.INFORMATION, "No Value on Left", fhirType() + "." + name));
    } else if (!r.hasValue()) {
        match = new StructuralMatch<>(l.primitiveValue(), null, vmI(IssueSeverity.INFORMATION, "No Value on Right", fhirType() + "." + name));
    } else if (l.getValue().equals(r.getValue())) {
        match = new StructuralMatch<>(l.primitiveValue(), r.primitiveValue(), null);
    } else {
        match = new StructuralMatch<>(l.primitiveValue(), r.primitiveValue(), vmI(level, "Values Differ", fhirType() + "." + name));
        if (level != IssueSeverity.NULL) {
            res.getMessages().add(new ValidationMessage(Source.ProfileComparer, IssueType.INFORMATIONAL, fhirType() + "." + name, "Values for " + name + " differ: '" + l.primitiveValue() + "' vs '" + r.primitiveValue() + "'", level));
        }
    }
    comp.put(name, match);
}