Examples with CanonicalResource org.hl7.fhir.r4b.model.CanonicalResource used on opensource projects

Example 51 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class CanonicalResourceComparer method renderMetadata.

public XhtmlNode renderMetadata(CanonicalResourceComparison<? extends CanonicalResource> comparison, String id, String prefix) throws FHIRException, IOException {
    // columns: code, display (left|right), properties (left|right)
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(Utilities.path("[tmp]", "compare"), false);
    TableModel model = gen.new TableModel(id, true);
    model.setAlternating(true);
    model.getTitles().add(gen.new Title(null, null, "Name", "Property Name", null, 100));
    model.getTitles().add(gen.new Title(null, null, "Value", "The value of the property", null, 200, 2));
    model.getTitles().add(gen.new Title(null, null, "Comments", "Additional information about the comparison", null, 200));
    for (String n : sorted(comparison.getMetadata().keySet())) {
        StructuralMatch<String> t = comparison.getMetadata().get(n);
        addRow(gen, model.getRows(), n, t);
    }
    return gen.generate(model, prefix, 0, null);
}

Example 52 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class ComparisonService method doLeftRightComparison.

public static void doLeftRightComparison(String[] args, String dest, ValidationEngine validator) throws IOException, FHIRException, EOperationOutcome {
    // ok now set up the comparison
    String left = Params.getParam(args, Params.LEFT);
    String right = Params.getParam(args, Params.RIGHT);
    Resource resLeft = validator.getContext().fetchResource(Resource.class, left);
    Resource resRight = validator.getContext().fetchResource(Resource.class, right);
    if (resLeft == null) {
        System.out.println("Unable to locate left resource " + left);
    }
    if (resRight == null) {
        System.out.println("Unable to locate right resource " + right);
    }
    if (resLeft != null && resRight != null) {
        if (resLeft instanceof StructureDefinition && resRight instanceof StructureDefinition) {
            ComparisonService.compareStructureDefinitions(dest, validator, left, right, (StructureDefinition) resLeft, (StructureDefinition) resRight);
        } else if (resLeft instanceof CapabilityStatement && resRight instanceof CapabilityStatement) {
            ComparisonService.compareCapabilityStatements(args, dest, validator, left, right, (CanonicalResource) resLeft, (CanonicalResource) resRight);
        } else
            System.out.println("Unable to compare left resource " + left + " (" + resLeft.fhirType() + ") with right resource " + right + " (" + resRight.fhirType() + ")");
    }
}

Example 53 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class StandAloneValidatorFetcher method fetchCanonicalResource.

@Override
public CanonicalResource fetchCanonicalResource(IResourceValidator validator, String url) throws URISyntaxException {
    String[] p = url.split("\\/");
    String root = getRoot(p, url);
    if (root != null) {
        TerminologyClient c;
        c = TerminologyClientFactory.makeClient(root, "fhir/validator", context.getVersion());
        return c.read(p[p.length - 2], p[p.length - 1]);
    } else {
        throw new FHIRException("The URL '" + url + "' is not known to the FHIR validator, and has not been provided as part of the setup / parameters");
    }
}

Example 54 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method cacheResourceFromPackage.

public void cacheResourceFromPackage(Resource r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        Map<String, ResourceProxy> map = allResourcesById.get(r.fhirType());
        if (map == null) {
            map = new HashMap<String, ResourceProxy>();
            allResourcesById.put(r.fhirType(), map);
        }
        if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
            map.put(r.getId(), new ResourceProxy(r));
        } else {
            System.out.println("Ignore " + r.fhirType() + "/" + r.getId() + " from package " + packageInfo.toString());
        }
        if (r instanceof CodeSystem || r instanceof NamingSystem) {
            oidCache.clear();
        }
        if (r instanceof CanonicalResource) {
            CanonicalResource m = (CanonicalResource) r;
            String url = m.getUrl();
            if (!allowLoadingDuplicates && hasResource(r.getClass(), url)) {
                // spcial workaround for known problems with existing packages
                if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                    return;
                }
                throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
            }
            if (r instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) m;
                if ("1.4.0".equals(version)) {
                    fixOldSD(sd);
                }
                structures.see(sd, packageInfo);
            } else if (r instanceof ValueSet) {
                valueSets.see((ValueSet) m, packageInfo);
            } else if (r instanceof CodeSystem) {
                CodeSystemUtilities.crossLinkCodeSystem((CodeSystem) r);
                codeSystems.see((CodeSystem) m, packageInfo);
            } else if (r instanceof ImplementationGuide) {
                guides.see((ImplementationGuide) m, packageInfo);
            } else if (r instanceof CapabilityStatement) {
                capstmts.see((CapabilityStatement) m, packageInfo);
            } else if (r instanceof Measure) {
                measures.see((Measure) m, packageInfo);
            } else if (r instanceof Library) {
                libraries.see((Library) m, packageInfo);
            } else if (r instanceof SearchParameter) {
                searchParameters.see((SearchParameter) m, packageInfo);
            } else if (r instanceof PlanDefinition) {
                plans.see((PlanDefinition) m, packageInfo);
            } else if (r instanceof OperationDefinition) {
                operations.see((OperationDefinition) m, packageInfo);
            } else if (r instanceof Questionnaire) {
                questionnaires.see((Questionnaire) m, packageInfo);
            } else if (r instanceof ConceptMap) {
                maps.see((ConceptMap) m, packageInfo);
            } else if (r instanceof StructureMap) {
                transforms.see((StructureMap) m, packageInfo);
            } else if (r instanceof NamingSystem) {
                systems.see((NamingSystem) m, packageInfo);
            }
        }
    }
}

Example 55 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method fetchResourceWithException.

@SuppressWarnings("unchecked")
public <T extends Resource> T fetchResourceWithException(Class<T> class_, String uri, String version, CanonicalResource source) throws FHIRException {
    if (uri == null) {
        return null;
    }
    if (class_ == StructureDefinition.class) {
        uri = ProfileUtilities.sdNs(uri, getOverrideVersionNs());
    }
    synchronized (lock) {
        if (uri.contains("|")) {
            version = uri.substring(uri.lastIndexOf("|") + 1);
            uri = uri.substring(0, uri.lastIndexOf("|"));
        }
        if (uri.contains("#")) {
            uri = uri.substring(0, uri.indexOf("#"));
        }
        if (class_ == Resource.class || class_ == null) {
            if (structures.has(uri)) {
                return (T) structures.get(uri, version);
            }
            if (guides.has(uri)) {
                return (T) guides.get(uri, version);
            }
            if (capstmts.has(uri)) {
                return (T) capstmts.get(uri, version);
            }
            if (measures.has(uri)) {
                return (T) measures.get(uri, version);
            }
            if (libraries.has(uri)) {
                return (T) libraries.get(uri, version);
            }
            if (valueSets.has(uri)) {
                return (T) valueSets.get(uri, version);
            }
            if (codeSystems.has(uri)) {
                return (T) codeSystems.get(uri, version);
            }
            if (operations.has(uri)) {
                return (T) operations.get(uri, version);
            }
            if (searchParameters.has(uri)) {
                return (T) searchParameters.get(uri, version);
            }
            if (plans.has(uri)) {
                return (T) plans.get(uri, version);
            }
            if (maps.has(uri)) {
                return (T) maps.get(uri, version);
            }
            if (transforms.has(uri)) {
                return (T) transforms.get(uri, version);
            }
            if (questionnaires.has(uri)) {
                return (T) questionnaires.get(uri, version);
            }
            if (uri.matches(Constants.URI_REGEX) && !uri.contains("ValueSet")) {
                return null;
            }
            // it might be a special URL.
            if (Utilities.isAbsoluteUrl(uri) || uri.startsWith("ValueSet/")) {
                // findTxValueSet(uri);
                Resource res = null;
                if (res != null) {
                    return (T) res;
                }
            }
            for (Map<String, ResourceProxy> rt : allResourcesById.values()) {
                for (ResourceProxy r : rt.values()) {
                    if (uri.equals(r.getUrl())) {
                        if (version == null || version == r.getResource().getMeta().getVersionId()) {
                            return (T) r.getResource();
                        }
                    }
                }
            }
            return null;
        } else if (class_ == ImplementationGuide.class) {
            return (T) guides.get(uri, version);
        } else if (class_ == CapabilityStatement.class) {
            return (T) capstmts.get(uri, version);
        } else if (class_ == Measure.class) {
            return (T) measures.get(uri, version);
        } else if (class_ == Library.class) {
            return (T) libraries.get(uri, version);
        } else if (class_ == StructureDefinition.class) {
            return (T) structures.get(uri, version);
        } else if (class_ == StructureMap.class) {
            return (T) transforms.get(uri, version);
        } else if (class_ == ValueSet.class) {
            return (T) valueSets.get(uri, version);
        } else if (class_ == CodeSystem.class) {
            return (T) codeSystems.get(uri, version);
        } else if (class_ == ConceptMap.class) {
            return (T) maps.get(uri, version);
        } else if (class_ == PlanDefinition.class) {
            return (T) plans.get(uri, version);
        } else if (class_ == OperationDefinition.class) {
            OperationDefinition od = operations.get(uri, version);
            return (T) od;
        } else if (class_ == Questionnaire.class) {
            return (T) questionnaires.get(uri, version);
        } else if (class_ == SearchParameter.class) {
            SearchParameter res = searchParameters.get(uri, version);
            return (T) res;
        }
        if (class_ == CodeSystem.class && codeSystems.has(uri)) {
            return (T) codeSystems.get(uri, version);
        }
        if (class_ == ValueSet.class && valueSets.has(uri)) {
            return (T) valueSets.get(uri, version);
        }
        if (class_ == Questionnaire.class) {
            return (T) questionnaires.get(uri, version);
        }
        if (supportedCodeSystems.contains(uri)) {
            return null;
        }
        throw new FHIRException(formatMessage(I18nConstants.NOT_DONE_YET_CANT_FETCH_, uri));
    }
}