Examples with CapabilityStatement org.hl7.fhir.r4b.model.CapabilityStatement used on opensource projects

Example 86 with CapabilityStatement

use of org.hl7.fhir.r4b.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___datetime_parameters_on_report_in_utc.

@Test
public void measure_report_generated___datetime_parameters_on_report_in_utc() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    String fhirDefaultDatetimeParamterName = "fhirDatetimeParamDefault";
    String fhirTimezoneDatetimeParameterName = "fhirDatetimeParamGMTPlus4";
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    measure.addExtension(createParameterExtension(fhirDefaultDatetimeParamterName, new DateTimeType("2020-04-04")));
    measure.addExtension(createParameterExtension(fhirTimezoneDatetimeParameterName, new DateTimeType("2020-04-04T00:00:00.0+04:00")));
    mockFhirResourceRetrieval(measure);
    String javaDefaultDatetimeParamterName = "javaDatetimeParamDefault";
    String javaTimezoneDatetimeParameterName = "javaDatetimeParamGMTPlus4";
    Map<String, Parameter> parameterMap = new HashMap<>();
    parameterMap.put(javaDefaultDatetimeParamterName, new DatetimeParameter("2020-01-01"));
    parameterMap.put(javaTimezoneDatetimeParameterName, new DatetimeParameter("2020-01-01T00:00:00.0+04:00"));
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameterMap);
    assertNotNull(report);
    Map<String, DateTimeType> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).filter(x -> x.getExtensionByUrl(PARAMETER_VALUE_URL).getValue() instanceof DateTimeType).collect(Collectors.toMap(ParameterDefinition::getName, x -> (DateTimeType) x.getExtensionByUrl(PARAMETER_VALUE_URL).getValue()));
    DateTimeType javaDefaultResult = parameterNames.get(javaDefaultDatetimeParamterName);
    DateTimeType javaTimezoneResult = parameterNames.get(javaTimezoneDatetimeParameterName);
    assertTrue(new DateTimeType("2020-01-01T00:00:00.000Z").equalsUsingFhirPathRules(javaDefaultResult));
    assertEquals(TimeZone.getTimeZone("UTC"), javaDefaultResult.getTimeZone());
    assertTrue(new DateTimeType("2019-12-31T20:00:00.000Z").equalsUsingFhirPathRules(javaTimezoneResult));
    assertEquals(TimeZone.getTimeZone("UTC"), javaTimezoneResult.getTimeZone());
    DateTimeType fhirDefaultResult = parameterNames.get(fhirDefaultDatetimeParamterName);
    DateTimeType fhirTimezoneResult = parameterNames.get(fhirTimezoneDatetimeParameterName);
    assertTrue(new DateTimeType("2020-04-04T00:00:00.000Z").equalsUsingFhirPathRules(fhirDefaultResult));
    assertEquals(TimeZone.getTimeZone("UTC"), fhirDefaultResult.getTimeZone());
    assertTrue(new DateTimeType("2020-04-03T20:00:00.000Z").equalsUsingFhirPathRules(fhirTimezoneResult));
    assertEquals(TimeZone.getTimeZone("UTC"), fhirTimezoneResult.getTimeZone());
}

Example 87 with CapabilityStatement

use of org.hl7.fhir.r4b.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_default_invalid_type.

@Test(expected = InvalidOperatorArgument.class)
public void measure_default_invalid_type() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestAdultMales", DEFAULT_VERSION, "cql/fhir-measure/test-parameter-defaults.cql");
    expressionsByPopulationType.clear();
    expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
    expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
    expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
    Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
    measure.addExtension(createMeasureParameter("SomeAge", new StringType("invalid")));
    mockFhirResourceRetrieval(measure);
    evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions());
}

Example 88 with CapabilityStatement

use of org.hl7.fhir.r4b.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method in_populations_evaluated_resources_returned.

@Test
public void in_populations_evaluated_resources_returned() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = setupDefineReturnLibrary();
    expressionsByPopulationType.clear();
    expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
    expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
    expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
    Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions(true, DefineReturnOptions.NONE));
    assertNotNull(report);
    assertFalse(report.getEvaluatedResource().isEmpty());
    assertEquals(null, report.getExtensionByUrl(CDMConstants.EVIDENCE_URL));
}

Example 89 with CapabilityStatement

use of org.hl7.fhir.r4b.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method in_one_initial_population_for_two_measures___two_measure_reports_returned.

@Test
public void in_one_initial_population_for_two_measures___two_measure_reports_returned() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql");
    String measure1Name = "ProportionMeasureName1";
    Measure measure1 = getCareGapMeasure(measure1Name, library, expressionsByPopulationType, "CareGap1", "CareGap2");
    mockFhirResourceRetrieval(measure1);
    String measure2Name = "ProportionMeasureName2";
    Measure measure2 = getCareGapMeasure(measure2Name, library, expressionsByPopulationType, "CareGap1", "CareGap2");
    mockFhirResourceRetrieval(measure2);
    Map<String, Parameter> passingParameters = new HashMap<>();
    passingParameters.put("InInitialPopulation", new BooleanParameter(true));
    Map<String, Parameter> failingParameters = new HashMap<>();
    failingParameters.put("InInitialPopulation", new BooleanParameter(false));
    List<MeasureContext> measureContexts = new ArrayList<>();
    measureContexts.add(new MeasureContext(measure1.getId(), passingParameters));
    measureContexts.add(new MeasureContext(measure2.getId(), failingParameters));
    List<MeasureReport> measureReports = evaluator.evaluatePatientMeasures(patient.getId(), measureContexts);
    assertEquals(2, measureReports.size());
    // Make sure reports have measure references with meta version included
    assertEquals("Measure/" + measure1Name + "/_history/" + MeasureTestBase.MEASURE_META_VERSION_ID, measureReports.get(0).getMeasure());
    assertEquals("Measure/" + measure2Name + "/_history/" + MeasureTestBase.MEASURE_META_VERSION_ID, measureReports.get(1).getMeasure());
}

Example 90 with CapabilityStatement

use of org.hl7.fhir.r4b.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method elm_and_cql_in_initial_population___cohort_evaluated_correctly.

@Test
public void elm_and_cql_in_initial_population___cohort_evaluated_correctly() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql", "text/cql", "cql/fhir-measure/test-dummy-populations.xml", "application/elm+xml");
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    assertEquals(1, report.getGroupFirstRep().getPopulationFirstRep().getCount());
}