Examples with ContactPoint org.hl7.fhir.r4b.model.ContactPoint used on opensource projects

Example 41 with ContactPoint

use of org.hl7.fhir.r4b.model.ContactPoint in project org.hl7.fhir.core by hapifhir.

the class IEEE11073Convertor method generateMDC.

public static CodeSystem generateMDC(String src, String dst, UcumService ucum) throws IOException, FHIRException {
    CSVReader csv = new CSVReader(new FileInputStream(src));
    csv.readHeaders();
    CodeSystem cs = new CodeSystem();
    Map<String, String> ucumIssues = new HashMap<String, String>();
    int errorCount = 0;
    cs.setId("MDC");
    cs.setUrl("urn:iso:std:iso:11073:10101");
    cs.setVersion("[todo]");
    cs.setName("11073:10101 codes for the FHIR community");
    cs.setStatus(PublicationStatus.ACTIVE);
    cs.setExperimental(false);
    cs.setDateElement(new DateTimeType());
    cs.setPublisher("HL7 (FHIR Project)");
    ContactDetail cd = cs.addContact();
    ContactPoint cp = cd.addTelecom();
    cp.setSystem(ContactPointSystem.URL);
    cp.setValue("http://ieee?");
    cs.setDescription("1073 Codes for the FHIR community (generated from the Rosetta data");
    Identifier i = new Identifier();
    cs.setIdentifier(i);
    i.setSystem("urn:ietf:rfc:3986");
    i.setValue("urn:oid:2.16.840.1.113883.6.24");
    cs.setCaseSensitive(false);
    cs.setContent(CodeSystemContentMode.COMPLETE);
    cs.addProperty().setCode("ucum").setDescription("UCUM units associated with Concept").setType(PropertyType.STRING);
    cs.addProperty().setCode("unit").setDescription("MDC units associated with Concept").setType(PropertyType.STRING);
    cs.addProperty().setCode("refid").setDescription("MDC Reference Id for Concept").setType(PropertyType.CODE);
    Set<String> codes = new HashSet<String>();
    while (csv.line()) {
        if (csv.has("CF_CODE10")) {
            String code = csv.cell("CF_CODE10");
            if (codes.contains(code))
                System.out.println("Duplicate Code " + code);
            else {
                codes.add(code);
                ConceptDefinitionComponent c = cs.addConcept();
                c.setCode(code);
                c.setDisplay(csv.cell("Common Term"));
                c.setDefinition(csv.cell("Term Description"));
                String vd = csv.cell("Vendor_Description");
                if (!c.hasDefinition())
                    c.setDefinition(vd);
                if (!c.hasDisplay())
                    c.setDisplay(vd);
                String refid = csv.cell("REFID");
                c.addProperty().setCode("refid").setValue(new CodeType().setValue(refid));
                if (csv.has("Synonym"))
                    c.addDesignation().setValue(csv.cell("Synonym")).setUse(new Coding().setSystem("http://hl7.org/fhir/designation-use").setCode("synonym"));
                if (csv.has("Acronym"))
                    c.addDesignation().setValue(csv.cell("Acronym")).setUse(new Coding().setSystem("http://hl7.org/fhir/designation-use").setDisplay("acronym"));
                if (csv.has("Systematic Name")) {
                    String sysName = csv.cell("Systematic Name");
                    if (!c.hasDefinition())
                        c.setDefinition(sysName);
                    c.addDesignation().setValue(sysName).setUse(new Coding().setSystem("http://hl7.org/fhir/designation-use").setCode("structured-name"));
                }
                if (csv.has("UOM_MDC"))
                    c.addProperty().setCode("unit").setValue(new StringType().setValue(csv.cell("UOM_MDC")));
                if (csv.has("UOM_UCUM")) {
                    CommaSeparatedStringBuilder ul = new CommaSeparatedStringBuilder();
                    for (String u : csv.cell("UOM_UCUM").split(" ")) {
                        String msg = ucum.validate(u);
                        if (msg != null) {
                            errorCount++;
                            ucumIssues.put(u, msg);
                        } else
                            ul.append(u);
                    }
                    if (ul.length() > 0)
                        c.addProperty().setCode("ucum").setValue(new StringType().setValue(ul.toString()));
                }
            }
        }
    }
    csv.close();
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dst, "codesystem-" + cs.getId() + ".xml")), cs);
    System.out.println(errorCount + "UCUM errors");
    for (String u : sorted(ucumIssues.keySet())) System.out.println("Invalid UCUM code: " + u + " because " + ucumIssues.get(u));
    return cs;
}

Example 42 with ContactPoint

use of org.hl7.fhir.r4b.model.ContactPoint in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        x.addText("Extensions: Todo");
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu2.model.DateType)
        x.addText(((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.addTag("a").attribute("href", tr.getReference());
                else
                    c = x.addTag("a").attribute("href", r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null) {
                c.addText(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.addText("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
}

Example 43 with ContactPoint

use of org.hl7.fhir.r4b.model.ContactPoint in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method displayContactPoint.

public static String displayContactPoint(ContactPoint contact) {
    StringBuilder s = new StringBuilder();
    s.append(describeSystem(contact.getSystem()));
    if (Utilities.noString(contact.getValue()))
        s.append("-unknown-");
    else
        s.append(contact.getValue());
    if (contact.hasUse())
        s.append("(" + contact.getUse().toString() + ")");
    return s.toString();
}

Example 44 with ContactPoint

use of org.hl7.fhir.r4b.model.ContactPoint in project org.hl7.fhir.core by hapifhir.

the class JsonParser method composeType.

protected void composeType(String prefix, Type type) throws IOException {
    if (type == null)
        ;
    else if (type instanceof Age)
        composeAge(prefix + "Age", (Age) type);
    else if (type instanceof Count)
        composeCount(prefix + "Count", (Count) type);
    else if (type instanceof Money)
        composeMoney(prefix + "Money", (Money) type);
    else if (type instanceof Distance)
        composeDistance(prefix + "Distance", (Distance) type);
    else if (type instanceof Duration)
        composeDuration(prefix + "Duration", (Duration) type);
    else if (type instanceof SimpleQuantity)
        composeSimpleQuantity(prefix + "SimpleQuantity", (SimpleQuantity) type);
    else if (type instanceof Period)
        composePeriod(prefix + "Period", (Period) type);
    else if (type instanceof Coding)
        composeCoding(prefix + "Coding", (Coding) type);
    else if (type instanceof Range)
        composeRange(prefix + "Range", (Range) type);
    else if (type instanceof Quantity)
        composeQuantity(prefix + "Quantity", (Quantity) type);
    else if (type instanceof Attachment)
        composeAttachment(prefix + "Attachment", (Attachment) type);
    else if (type instanceof Ratio)
        composeRatio(prefix + "Ratio", (Ratio) type);
    else if (type instanceof Annotation)
        composeAnnotation(prefix + "Annotation", (Annotation) type);
    else if (type instanceof SampledData)
        composeSampledData(prefix + "SampledData", (SampledData) type);
    else if (type instanceof Reference)
        composeReference(prefix + "Reference", (Reference) type);
    else if (type instanceof CodeableConcept)
        composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
    else if (type instanceof Identifier)
        composeIdentifier(prefix + "Identifier", (Identifier) type);
    else if (type instanceof Signature)
        composeSignature(prefix + "Signature", (Signature) type);
    else if (type instanceof TriggerDefinition)
        composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
    else if (type instanceof ElementDefinition)
        composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
    else if (type instanceof Timing)
        composeTiming(prefix + "Timing", (Timing) type);
    else if (type instanceof ModuleMetadata)
        composeModuleMetadata(prefix + "ModuleMetadata", (ModuleMetadata) type);
    else if (type instanceof ActionDefinition)
        composeActionDefinition(prefix + "ActionDefinition", (ActionDefinition) type);
    else if (type instanceof Address)
        composeAddress(prefix + "Address", (Address) type);
    else if (type instanceof HumanName)
        composeHumanName(prefix + "HumanName", (HumanName) type);
    else if (type instanceof DataRequirement)
        composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
    else if (type instanceof Meta)
        composeMeta(prefix + "Meta", (Meta) type);
    else if (type instanceof ParameterDefinition)
        composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
    else if (type instanceof ContactPoint)
        composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
    else if (type instanceof MarkdownType) {
        composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
        composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
    } else if (type instanceof UnsignedIntType) {
        composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
        composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
    } else if (type instanceof CodeType) {
        composeCodeCore(prefix + "Code", (CodeType) type, false);
        composeCodeExtras(prefix + "Code", (CodeType) type, false);
    } else if (type instanceof IdType) {
        composeIdCore(prefix + "Id", (IdType) type, false);
        composeIdExtras(prefix + "Id", (IdType) type, false);
    } else if (type instanceof OidType) {
        composeOidCore(prefix + "Oid", (OidType) type, false);
        composeOidExtras(prefix + "Oid", (OidType) type, false);
    } else if (type instanceof PositiveIntType) {
        composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
        composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
    } else if (type instanceof UuidType) {
        composeUuidCore(prefix + "Uuid", (UuidType) type, false);
        composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
    } else if (type instanceof IntegerType) {
        composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
        composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
    } else if (type instanceof DateTimeType) {
        composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
        composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
    } else if (type instanceof DateType) {
        composeDateCore(prefix + "Date", (DateType) type, false);
        composeDateExtras(prefix + "Date", (DateType) type, false);
    } else if (type instanceof DecimalType) {
        composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
        composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
    } else if (type instanceof UriType) {
        composeUriCore(prefix + "Uri", (UriType) type, false);
        composeUriExtras(prefix + "Uri", (UriType) type, false);
    } else if (type instanceof Base64BinaryType) {
        composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
        composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
    } else if (type instanceof TimeType) {
        composeTimeCore(prefix + "Time", (TimeType) type, false);
        composeTimeExtras(prefix + "Time", (TimeType) type, false);
    } else if (type instanceof StringType) {
        composeStringCore(prefix + "String", (StringType) type, false);
        composeStringExtras(prefix + "String", (StringType) type, false);
    } else if (type instanceof BooleanType) {
        composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
        composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
    } else if (type instanceof InstantType) {
        composeInstantCore(prefix + "Instant", (InstantType) type, false);
        composeInstantExtras(prefix + "Instant", (InstantType) type, false);
    } else
        throw new Error("Unhandled type");
}

Example 45 with ContactPoint

use of org.hl7.fhir.r4b.model.ContactPoint in project org.hl7.fhir.core by hapifhir.

the class ResourceUtilities method showDECHeader.

private static DataElement showDECHeader(StringBuilder b, Bundle bundle) {
    DataElement meta = new DataElement();
    DataElement prototype = (DataElement) bundle.getEntry().get(0).getResource();
    meta.setPublisher(prototype.getPublisher());
    meta.getContact().addAll(prototype.getContact());
    meta.setStatus(prototype.getStatus());
    meta.setDate(prototype.getDate());
    meta.addElement().getType().addAll(prototype.getElement().get(0).getType());
    for (BundleEntryComponent e : bundle.getEntry()) {
        DataElement de = (DataElement) e.getResource();
        if (!Base.compareDeep(de.getPublisherElement(), meta.getPublisherElement(), false))
            meta.setPublisherElement(null);
        if (!Base.compareDeep(de.getContact(), meta.getContact(), false))
            meta.getContact().clear();
        if (!Base.compareDeep(de.getStatusElement(), meta.getStatusElement(), false))
            meta.setStatusElement(null);
        if (!Base.compareDeep(de.getDateElement(), meta.getDateElement(), false))
            meta.setDateElement(null);
        if (!Base.compareDeep(de.getElement().get(0).getType(), meta.getElement().get(0).getType(), false))
            meta.getElement().get(0).getType().clear();
    }
    if (meta.hasPublisher() || meta.hasContact() || meta.hasStatus() || meta.hasDate()) /* || meta.hasType() */
    {
        b.append("<table class=\"grid\">\r\n");
        if (meta.hasPublisher())
            b.append("<tr><td>Publisher:</td><td>" + meta.getPublisher() + "</td></tr>\r\n");
        if (meta.hasContact()) {
            b.append("<tr><td>Contacts:</td><td>");
            boolean firsti = true;
            for (DataElementContactComponent c : meta.getContact()) {
                if (firsti)
                    firsti = false;
                else
                    b.append("<br/>");
                if (c.hasName())
                    b.append(Utilities.escapeXml(c.getName()) + ": ");
                boolean first = true;
                for (ContactPoint cp : c.getTelecom()) {
                    if (first)
                        first = false;
                    else
                        b.append(", ");
                    renderContactPoint(b, cp);
                }
            }
            b.append("</td></tr>\r\n");
        }
        if (meta.hasStatus())
            b.append("<tr><td>Status:</td><td>" + meta.getStatus().toString() + "</td></tr>\r\n");
        if (meta.hasDate())
            b.append("<tr><td>Date:</td><td>" + meta.getDateElement().asStringValue() + "</td></tr>\r\n");
        if (meta.getElement().get(0).hasType())
            b.append("<tr><td>Type:</td><td>" + renderType(meta.getElement().get(0).getType()) + "</td></tr>\r\n");
        b.append("</table>\r\n");
    }
    return meta;
}