use of org.hl7.fhir.r4b.model.Measure in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_populations_evaluated_boolean_define_only_returned.
@Test
public void in_populations_evaluated_boolean_define_only_returned() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = setupDefineReturnLibrary();
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions(false, DefineReturnOptions.BOOLEAN));
assertNotNull(report);
assertTrue(report.getEvaluatedResource().isEmpty());
assertFalse(report.getExtensionsByUrl(CDMConstants.EVIDENCE_URL).isEmpty());
}
use of org.hl7.fhir.r4b.model.Measure in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_initial_population_when_engine_run_in_utc__engine_defaults_to_utc.
@Test
public void in_initial_population_when_engine_run_in_utc__engine_defaults_to_utc() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
// Test CQL written to pass when engine run with a timezone of UTC
// and should fail otherwise
Library library = mockLibraryRetrieval("TestDatetimeDefaultTimezones", DEFAULT_VERSION, "cql/fhir-measure/test-datetime-default-timezones.cql", "text/cql");
Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions(false, DefineReturnOptions.BOOLEAN));
assertNotNull(report);
report.getExtension().stream().filter(x -> x.getUrl().equals(CDMConstants.EVIDENCE_URL)).forEach(x -> validateBooleanEvidence(x, true));
}
use of org.hl7.fhir.r4b.model.Measure in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_populations_evaluated_define_only_returned.
@Test
public void in_populations_evaluated_define_only_returned() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = setupDefineReturnLibrary();
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions(false, DefineReturnOptions.ALL));
assertNotNull(report);
assertTrue(report.getEvaluatedResource().isEmpty());
assertFalse(report.getExtensionsByUrl(CDMConstants.EVIDENCE_URL).isEmpty());
}
use of org.hl7.fhir.r4b.model.Measure in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method measure_default_valid.
@Test
public void measure_default_valid() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = mockLibraryRetrieval("TestAdultMales", DEFAULT_VERSION, "cql/fhir-measure/test-parameter-defaults.cql");
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
measure.addExtension(createMeasureParameter("SomeAge", new IntegerType(20)));
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions());
assertNotNull(report);
}
use of org.hl7.fhir.r4b.model.Measure in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_populations_supplemental_data.
@Test
public void in_populations_supplemental_data() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = setupDefineReturnLibrary();
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
measure.setSupplementalData(Arrays.asList(createSupplementalDataComponent("SDE Sex", MeasureSupplementalDataEvaluation.SDE_SEX)));
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions());
assertNotNull(report);
// EvaluatedResource should contain a reference to an observation record created for supplemental data, despite the evidence options indicating returning no evaluatedResources
assertEquals(1, report.getEvaluatedResource().size());
// See MeasureSupplementalDataEvaluationTest for more details on what is returned here
}
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