Examples with StructureDefinition org.hl7.fhir.r4b.model.StructureDefinition used on opensource projects

Example 81 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class MappingsGenerator method generateExtension.

public void generateExtension(StructureDefinition ed) throws IOException {
    if (ed.getMapping().isEmpty())
        mappings = "<p>No Mappings</p>";
    else {
        StringBuilder s = new StringBuilder();
        for (StructureDefinitionMappingComponent map : ed.getMapping()) {
            s.append("<a name=\"" + map.getIdentity() + "\"> </a><h3>" + map.getName() + " (" + map.getUri() + ")</h3>");
            if (map.hasComment())
                s.append("<p>" + Utilities.escapeXml(map.getComment()) + "</p>");
            else if (definitions.getMapTypes().containsKey(map.getUri())) {
                XhtmlNode pre = definitions.getMapTypes().get(map.getUri()).getPreamble();
                if (pre != null)
                    s.append(new XhtmlComposer(XhtmlComposer.HTML).compose(pre));
            }
            s.append("<table class=\"grid\">\r\n");
            s.append(" <tr><td colspan=\"3\"><b>" + Utilities.escapeXml(ed.getName()) + "</b></td></tr>\r\n");
            String path = null;
            for (ElementDefinition e : ed.getSnapshot().getElement()) {
                if (path == null || !e.getPath().startsWith(path)) {
                    path = null;
                    if (e.hasMax() && e.getMax().equals("0")) {
                        path = e.getPath() + ".";
                    } else
                        genElement(s, e, map.getIdentity());
                }
            }
            s.append("</table>\r\n");
        }
        mappings = s.toString();
    }
}

Example 82 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class ProfileGenerator method generateLogicalModel.

public StructureDefinition generateLogicalModel(ImplementationGuideDefn igd, ResourceDefn r) throws Exception {
    StructureDefinition p = new StructureDefinition();
    p.setId(r.getRoot().getName());
    p.setUrl("http://hl7.org/fhir/StructureDefinition/" + r.getRoot().getName());
    p.setKind(StructureDefinitionKind.LOGICAL);
    p.setAbstract(false);
    p.setUserData("filename", r.getName().toLowerCase());
    p.setUserData("path", igd.getPrefix() + r.getName().toLowerCase() + ".html");
    p.setTitle(r.getName());
    p.setFhirVersion(version);
    p.setVersion(version.toCode());
    p.setType(r.getRoot().getName());
    ToolingExtensions.setStandardsStatus(p, r.getStatus(), null);
    ToolResourceUtilities.updateUsage(p, igd.getCode());
    p.setName(r.getRoot().getName());
    p.setPublisher("Health Level Seven International" + (r.getWg() == null ? " " + igd.getCommittee() : " (" + r.getWg().getName() + ")"));
    p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    if (r.getWg() != null) {
        p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, r.getWg().getUrl()));
        ToolingExtensions.setCodeExtension(p, ToolingExtensions.EXT_WORKGROUP, r.getWg().getCode());
    }
    p.setDescription("Logical Model: " + r.getDefinition());
    p.setPurpose(r.getRoot().getRequirements());
    if (!p.hasPurpose())
        p.setPurpose(r.getRoot().getRequirements());
    p.setDate(genDate.getTime());
    // DSTU
    p.setStatus(PublicationStatus.fromCode("draft"));
    Set<String> containedSlices = new HashSet<String>();
    // first, the differential
    p.setSnapshot(new StructureDefinitionSnapshotComponent());
    defineElement(null, p, p.getSnapshot().getElement(), r.getRoot(), r.getRoot().getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.None, true, "Element", "Element", true);
    addElementConstraintToSnapshot(p);
    XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
    div.addText("to do");
    p.setText(new Narrative());
    p.getText().setStatus(NarrativeStatus.GENERATED);
    p.getText().setDiv(div);
    return p;
}

Example 83 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class ProfileGenerator method convertElements.

public void convertElements(ElementDefn src, StructureDefinition ed, String path) throws Exception {
    ElementDefinition dst = new ElementDefinition();
    if (!ed.hasDifferential())
        ed.setDifferential(new StructureDefinitionDifferentialComponent());
    ed.getDifferential().getElement().add(dst);
    String thisPath = path == null ? "Extension" : path;
    dst.setId(thisPath);
    dst.setPath(thisPath);
    if (!Utilities.noString(src.getProfileName()))
        dst.setSliceName(src.getProfileName());
    dst.setShort(src.getShortDefn());
    dst.setDefinition(preProcessMarkdown(src.getDefinition(), "Element Definition"));
    dst.setComment(preProcessMarkdown(src.getComments(), "Element Comments"));
    if (src.getMaxCardinality() != null) {
        if (src.getMaxCardinality() == Integer.MAX_VALUE)
            dst.setMax("*");
        else
            dst.setMax(src.getMaxCardinality().toString());
    }
    if (src.getMinCardinality() != null)
        dst.setMin(src.getMinCardinality());
    if (src.getFixed() != null)
        dst.setFixed(src.getFixed());
    if (src.hasMustSupport())
        dst.setMustSupport(src.isMustSupport());
    if (src.hasModifier())
        dst.setIsModifier(src.isModifier());
    if (dst.getIsModifier())
        dst.setIsModifierReason(src.getModifierReason());
    if (src.hasSummaryItem() && dst.getPath().contains("."))
        dst.setIsSummaryElement(Factory.newBoolean(src.isSummary()));
    for (Invariant id : src.getStatedInvariants()) dst.addCondition(id.getId());
    // dDst.
    for (TypeRef t : src.getTypes()) {
        if (t.hasParams()) {
            for (String tp : t.getParams()) {
                if (definitions.hasLogicalModel(tp)) {
                    for (String tpn : definitions.getLogicalModel(tp).getImplementations()) {
                        ElementDefinition.TypeRefComponent type = dst.getType(t.getName());
                        String pr = "http://hl7.org/fhir/StructureDefinition/" + tpn;
                        type.addTargetProfile(pr);
                    }
                } else {
                    ElementDefinition.TypeRefComponent type = dst.getType(t.getName());
                    String pr = t.hasProfile() ? t.getProfile() : // this should only happen if t.getParams().size() == 1
                    "http://hl7.org/fhir/StructureDefinition/" + (tp.equals("Any") ? "Resource" : tp);
                    if (type.getWorkingCode().equals("Reference") || type.getWorkingCode().equals("canonical") || type.getWorkingCode().equals("CodeableReference"))
                        type.addTargetProfile(pr);
                    else
                        type.addProfile(pr);
                }
            }
        } else if (t.isWildcardType()) {
            for (String n : TypesUtilities.wildcardTypes(version.toString())) dst.getType(n);
        } else {
            if (definitions != null && definitions.getConstraints().containsKey(t.getName())) {
                ProfiledType ct = definitions.getConstraints().get(t.getName());
                ElementDefinition.TypeRefComponent type = dst.getType(ct.getBaseType());
                type.addProfile("http://hl7.org/fhir/StructureDefinition/" + ct.getName());
            } else if ("Extension.url".equals(path)) {
            // juat don't populate it
            // ElementDefinition.TypeRefComponent tt = dst.addType();
            // tt.setCodeElement(new UriType());
            // tt.getFormatCommentsPre().add("Note: special primitive values do not have an assigned type. e.g. this is compiler magic. XML, JSON and RDF types provided by extension");
            // ToolingExtensions.addStringExtension(tt.getCodeElement(), ToolingExtensions.EXT_JSON_TYPE, "string");
            // ToolingExtensions.addStringExtension(tt.getCodeElement(), ToolingExtensions.EXT_XML_TYPE, "xs:anyURI");
            // ToolingExtensions.addStringExtension(tt.getCodeElement(), ToolingExtensions.EXT_RDF_TYPE, "xs:anyURI");
            } else {
                ElementDefinition.TypeRefComponent type = dst.getType(t.getName());
                if (t.hasProfile())
                    if (type.getWorkingCode().equals("Reference") || type.getWorkingCode().equals("CodeableReference"))
                        type.addTargetProfile(t.getProfile());
                    else
                        type.addProfile(t.getProfile());
            }
        }
    }
    if (definitions != null) {
        // igtodo - catch this
        for (String mu : definitions.getMapTypes().keySet()) {
            if (src.hasMapping(mu)) {
                addMapping(ed, dst, mu, src.getMapping(mu), null);
            }
        }
    }
    for (String in : src.getInvariants().keySet()) {
        ElementDefinitionConstraintComponent con = new ElementDefinitionConstraintComponent();
        Invariant inv = src.getInvariants().get(in);
        con.setKey(inv.getId());
        if (!con.hasKey()) {
            extensionCounter++;
            con.setKey("exd-" + Integer.toString(extensionCounter));
        }
        con.setRequirements(inv.getRequirements());
        if (Utilities.noString(inv.getSeverity()))
            con.setSeverity(ConstraintSeverity.ERROR);
        else
            con.setSeverity(ConstraintSeverity.fromCode(inv.getSeverity()));
        con.setHuman(inv.getEnglish());
        con.setXpath(inv.getXpath());
        if (!"n/a".equals(inv.getExpression()))
            con.setExpression(inv.getExpression());
        dst.getConstraint().add(con);
    }
    if (src.hasBinding())
        dst.setBinding(generateBinding(src.getBinding()));
    if (src.getElements().isEmpty()) {
        if (path == null)
            throw new Exception("?error parsing extension");
    } else {
        ElementDefn url = src.getElements().get(0);
        if (!url.getName().equals("url"))
            throw new Exception("first child of extension should be 'url', not " + url.getName() + " for structure definition " + ed.getUrl());
        convertElements(url, ed, thisPath + ".url");
        // this pair might leave elements out of order, but we're going to sort them later
        if (!hasValue(src)) {
            ElementDefn value = new ElementDefn();
            value.setName("value[x]");
            value.setMinCardinality(0);
            value.setMaxCardinality(0);
            convertElements(value, ed, thisPath + ".value[x]");
        } else {
            ElementDefn ext = new ElementDefn();
            // can't have an extension if you have a value
            ext.setName("extension");
            ext.setMaxCardinality(0);
            convertElements(ext, ed, thisPath + ".extension");
        }
        if (src.getElements().size() == 2 && src.getElements().get(0).getName().equals("url") && src.getElements().get(1).getName().equals("value[x]")) {
            ElementDefn value = src.getElements().get(1);
            value.setMinCardinality(1);
            convertElements(value, ed, thisPath + ".value[x]");
        } else {
            for (ElementDefn child : src.getElements()) {
                if (child != url) {
                    if (child.getName().startsWith("value") && !child.getName().startsWith("valueSet"))
                        convertElements(child, ed, thisPath + "." + child.getName());
                    else {
                        if (child.getElements().size() == 0 || !child.getElements().get(0).getName().equals("url")) {
                            ElementDefn childUrl = new ElementDefn();
                            childUrl.setName("url");
                            childUrl.setXmlAttribute(true);
                            childUrl.getTypes().add(new TypeRef("uri"));
                            childUrl.setFixed(new UriType(child.getName()));
                            child.getElements().add(0, childUrl);
                        }
                        if (!hasValue(child)) {
                            ElementDefn value = new ElementDefn();
                            value.setName("value[x]");
                            value.setMinCardinality(0);
                            value.setMaxCardinality(0);
                            child.getElements().add(value);
                        }
                        convertElements(child, ed, thisPath + ".extension");
                    }
                }
            }
        }
    }
}

Example 84 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class ProfileGenerator method generate.

public StructureDefinition generate(TypeDefn t) throws Exception {
    genUml(t);
    StructureDefinition p = new StructureDefinition();
    p.setId(t.getName());
    p.setUrl("http://hl7.org/fhir/StructureDefinition/" + t.getName());
    p.setKind(StructureDefinitionKind.COMPLEXTYPE);
    p.setAbstract(t.isAbstractType());
    p.setUserData("filename", t.getName().toLowerCase());
    p.setUserData("path", definitions.getSrcFile(t.getName()) + ".html#" + t.getName());
    assert !Utilities.noString(t.typeCode());
    String b = (t.typeCode().equals("Type") ? "Element" : t.typeCode().equals("Structure") ? "BackboneElement" : t.typeCode());
    if (!Utilities.noString(b)) {
        p.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/" + b);
        p.setDerivation(TypeDerivationRule.SPECIALIZATION);
    }
    p.setType(t.getName());
    p.setFhirVersion(version);
    p.setVersion(version.toCode());
    ToolingExtensions.setStandardsStatus(p, t.getStandardsStatus(), t.getNormativeVersion());
    ToolResourceUtilities.updateUsage(p, "core");
    p.setName(t.getName());
    p.setPublisher("HL7 FHIR Standard");
    p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    p.setDescription("Base StructureDefinition for " + t.getName() + " Type: " + t.getDefinition());
    p.setPurpose(t.getRequirements());
    p.setDate(genDate.getTime());
    p.setStatus(t.getStandardsStatus() == StandardsStatus.NORMATIVE ? PublicationStatus.fromCode("active") : PublicationStatus.fromCode("draft"));
    Set<String> containedSlices = new HashSet<String>();
    // first, the differential
    p.setDifferential(new StructureDefinitionDifferentialComponent());
    defineElement(null, p, p.getDifferential().getElement(), t, t.getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.None, true, "Element", b, false);
    p.getDifferential().getElement().get(0).setIsSummaryElement(null);
    reset();
    // now. the snapshot
    p.setSnapshot(new StructureDefinitionSnapshotComponent());
    defineElement(null, p, p.getSnapshot().getElement(), t, t.getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.DataType, true, "Element", b, true);
    for (ElementDefinition ed : p.getSnapshot().getElement()) if (ed.getBase().getPath().equals(ed.getPath()) && ed.getPath().contains("."))
        generateElementDefinition(p, ed, getParent(ed, p.getSnapshot().getElement()));
    containedSlices.clear();
    addElementConstraintToSnapshot(p);
    p.getDifferential().getElement().get(0).getType().clear();
    p.getSnapshot().getElement().get(0).getType().clear();
    p.getSnapshot().getElement().get(0).setIsSummaryElement(null);
    XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
    div.addText("to do");
    p.setText(new Narrative());
    p.getText().setStatus(NarrativeStatus.GENERATED);
    p.getText().setDiv(div);
    checkHasTypes(p);
    return p;
}

Example 85 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class ProfileGenerator method generateBinding.

private ElementDefinitionBindingComponent generateBinding(BindingSpecification src) throws Exception {
    if (src == null)
        return null;
    ElementDefinitionBindingComponent dst = new ElementDefinitionBindingComponent();
    dst.setDescription(src.getDescription());
    if (!Utilities.noString(src.getDefinition())) {
        dst.addExtension().setUrl(BuildExtensions.EXT_DEFINITION).setValue(new StringType(src.getDefinition()));
    }
    if (src.getBinding() != BindingMethod.Unbound) {
        dst.setStrength(src.getStrength());
        dst.setValueSet(buildValueSetReference(src));
        if (src.hasMax()) {
            dst.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet").setValue(new CanonicalType(src.getMaxReference() != null ? src.getMaxReference() : src.getMaxValueSet().getUrl()));
        }
    } else {
        dst.setStrength(BindingStrength.EXAMPLE);
    }
    dst.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName").setValue(new StringType(src.getName()));
    if (src.isShared())
        dst.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-isCommonBinding").setValue(new BooleanType(true));
    return dst;
}