Examples with UriType org.hl7.fhir.r4b.model.UriType used on opensource projects

Example 96 with UriType

use of org.hl7.fhir.r4b.model.UriType in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu3.model.DateType)
        x.addText(((org.hl7.fhir.dstu3.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu3.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu3.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu3.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu3.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.tx("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.tx(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.ah(tr.getReference());
                else
                    c = x.ah(r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null && tr.getResource() != null) {
                c.tx(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null && tr.getResource() != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
        if (sd == null)
            throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
        else
            generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails);
    }
}

Example 97 with UriType

use of org.hl7.fhir.r4b.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method genTypes.

private Cell genTypes(HierarchicalTableGenerator gen, Row r, ElementDefinition e, String profileBaseFileName, StructureDefinition profile, String corePath, String imagePath) {
    Cell c = gen.new Cell();
    r.getCells().add(c);
    List<TypeRefComponent> types = e.getType();
    if (!e.hasType()) {
        if (e.hasContentReference()) {
            return c;
        } else {
            ElementDefinition d = (ElementDefinition) e.getUserData(DERIVATION_POINTER);
            if (d != null && d.hasType()) {
                types = new ArrayList<ElementDefinition.TypeRefComponent>();
                for (TypeRefComponent tr : d.getType()) {
                    TypeRefComponent tt = tr.copy();
                    tt.setUserData(DERIVATION_EQUALS, true);
                    types.add(tt);
                }
            } else
                return c;
        }
    }
    boolean first = true;
    TypeRefComponent tl = null;
    for (TypeRefComponent t : types) {
        if (first)
            first = false;
        else
            c.addPiece(checkForNoChange(tl, gen.new Piece(null, ", ", null)));
        tl = t;
        if (t.hasTarget()) {
            c.getPieces().add(gen.new Piece(corePath + "references.html", t.getWorkingCode(), null));
            c.getPieces().add(gen.new Piece(null, "(", null));
            boolean tfirst = true;
            for (UriType u : t.getTargetProfile()) {
                if (tfirst)
                    tfirst = false;
                else
                    c.addPiece(gen.new Piece(null, " | ", null));
                genTargetLink(gen, profileBaseFileName, corePath, c, t, u.getValue());
            }
            c.getPieces().add(gen.new Piece(null, ")", null));
            if (t.getAggregation().size() > 0) {
                c.getPieces().add(gen.new Piece(corePath + "valueset-resource-aggregation-mode.html", " {", null));
                boolean firstA = true;
                for (Enumeration<AggregationMode> a : t.getAggregation()) {
                    if (firstA = true)
                        firstA = false;
                    else
                        c.getPieces().add(gen.new Piece(corePath + "valueset-resource-aggregation-mode.html", ", ", null));
                    c.getPieces().add(gen.new Piece(corePath + "valueset-resource-aggregation-mode.html", codeForAggregation(a.getValue()), hintForAggregation(a.getValue())));
                }
                c.getPieces().add(gen.new Piece(corePath + "valueset-resource-aggregation-mode.html", "}", null));
            }
        } else if (t.hasProfile() && (!t.getWorkingCode().equals("Extension") || isProfiledType(t.getProfile()))) {
            // a profiled type
            String ref;
            ref = pkp.getLinkForProfile(profile, t.getProfile().get(0).getValue());
            if (ref != null) {
                String[] parts = ref.split("\\|");
                if (parts[0].startsWith("http:") || parts[0].startsWith("https:")) {
                    // c.addPiece(checkForNoChange(t, gen.new Piece(parts[0], "<" + parts[1] + ">", t.getCode()))); Lloyd
                    c.addPiece(checkForNoChange(t, gen.new Piece(parts[0], parts[1], t.getWorkingCode())));
                } else {
                    // c.addPiece(checkForNoChange(t, gen.new Piece((t.getProfile().startsWith(corePath)? corePath: "")+parts[0], "<" + parts[1] + ">", t.getCode())));
                    c.addPiece(checkForNoChange(t, gen.new Piece((t.getProfile().get(0).getValue().startsWith(corePath + "StructureDefinition") ? corePath : "") + parts[0], parts[1], t.getWorkingCode())));
                }
            } else
                c.addPiece(checkForNoChange(t, gen.new Piece((t.getProfile().get(0).getValue().startsWith(corePath) ? corePath : "") + ref, t.getWorkingCode(), null)));
        } else {
            String tc = t.getWorkingCode();
            if (pkp != null && pkp.hasLinkFor(tc)) {
                c.addPiece(checkForNoChange(t, gen.new Piece(pkp.getLinkFor(corePath, tc), tc, null)));
            } else
                c.addPiece(checkForNoChange(t, gen.new Piece(null, tc, null)));
        }
    }
    return c;
}

Example 98 with UriType

use of org.hl7.fhir.r4b.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateExtensionTable.

public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, String imagePath, Set<String> outputTracker) throws IOException, FHIRException {
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
    gen.setTranslator(getTranslator());
    TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false);
    boolean deep = false;
    String m = "";
    boolean vdeep = false;
    if (ed.getSnapshot().getElementFirstRep().getIsModifier())
        m = "modifier_";
    for (ElementDefinition eld : ed.getSnapshot().getElement()) {
        deep = deep || eld.getPath().contains("Extension.extension.");
        vdeep = vdeep || eld.getPath().contains("Extension.extension.extension.");
    }
    Row r = gen.new Row();
    model.getRows().add(r);
    String en;
    if (!full)
        en = ed.getName();
    else if (ed.getSnapshot().getElement().get(0).getIsModifier())
        en = "modifierExtension";
    else
        en = "extension";
    r.getCells().add(gen.new Cell(null, defFile == null ? "" : defFile + "-definitions.html#extension." + ed.getName(), en, null, null));
    r.getCells().add(gen.new Cell());
    r.getCells().add(gen.new Cell(null, null, describeCardinality(ed.getSnapshot().getElement().get(0), null, new UnusedTracker()), null, null));
    ElementDefinition ved = null;
    if (full || vdeep) {
        r.getCells().add(gen.new Cell("", "", "Extension", null, null));
        r.setIcon(deep ? "icon_" + m + "extension_complex.png" : "icon_extension_simple.png", deep ? HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX : HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
        List<ElementDefinition> children = getChildren(ed.getSnapshot().getElement(), ed.getSnapshot().getElement().get(0));
        for (ElementDefinition child : children) if (!child.getPath().endsWith(".id"))
            genElement(defFile == null ? "" : defFile + "-definitions.html#extension.", gen, r.getSubRows(), child, ed.getSnapshot().getElement(), null, true, defFile, true, full, corePath, imagePath, true, false, false, false, null);
    } else if (deep) {
        List<ElementDefinition> children = new ArrayList<ElementDefinition>();
        for (ElementDefinition ted : ed.getSnapshot().getElement()) {
            if (ted.getPath().equals("Extension.extension"))
                children.add(ted);
        }
        r.getCells().add(gen.new Cell("", "", "Extension", null, null));
        r.setIcon("icon_" + m + "extension_complex.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX);
        for (ElementDefinition c : children) {
            ved = getValueFor(ed, c);
            ElementDefinition ued = getUrlFor(ed, c);
            if (ved != null && ued != null) {
                Row r1 = gen.new Row();
                r.getSubRows().add(r1);
                r1.getCells().add(gen.new Cell(null, defFile == null ? "" : defFile + "-definitions.html#extension." + ed.getName(), ((UriType) ued.getFixed()).getValue(), null, null));
                r1.getCells().add(gen.new Cell());
                r1.getCells().add(gen.new Cell(null, null, describeCardinality(c, null, new UnusedTracker()), null, null));
                genTypes(gen, r1, ved, defFile, ed, corePath, imagePath);
                Cell cell = gen.new Cell();
                cell.addMarkdown(c.getDefinition());
                r1.getCells().add(cell);
                r1.setIcon("icon_" + m + "extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
            }
        }
    } else {
        for (ElementDefinition ted : ed.getSnapshot().getElement()) {
            if (ted.getPath().startsWith("Extension.value"))
                ved = ted;
        }
        genTypes(gen, r, ved, defFile, ed, corePath, imagePath);
        r.setIcon("icon_" + m + "extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
    }
    Cell c = gen.new Cell("", "", "URL = " + ed.getUrl(), null, null);
    Piece cc = gen.new Piece(null, ed.getName() + ": ", null);
    c.addPiece(gen.new Piece("br")).addPiece(cc);
    c.addMarkdown(ed.getDescription());
    if (!full && !(deep || vdeep) && ved != null && ved.hasBinding()) {
        c.addPiece(gen.new Piece("br"));
        BindingResolution br = pkp.resolveBinding(ed, ved.getBinding(), ved.getPath());
        c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(null, translate("sd.table", "Binding") + ": ", null).addStyle("font-weight:bold")));
        c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(br.url == null ? null : Utilities.isAbsoluteUrl(br.url) || !pkp.prependLinks() ? br.url : corePath + br.url, br.display, null)));
        if (ved.getBinding().hasStrength()) {
            c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(null, " (", null)));
            c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(corePath + "terminologies.html#" + ved.getBinding().getStrength().toCode(), egt(ved.getBinding().getStrengthElement()), ved.getBinding().getStrength().getDefinition())));
            c.getPieces().add(gen.new Piece(null, ")", null));
        }
    }
    c.addPiece(gen.new Piece("br")).addPiece(gen.new Piece(null, describeExtensionContext(ed), null));
    r.getCells().add(c);
    try {
        return gen.generate(model, corePath, 0, outputTracker);
    } catch (org.hl7.fhir.exceptions.FHIRException e) {
        throw new FHIRException(e.getMessage(), e);
    }
}

Example 99 with UriType

use of org.hl7.fhir.r4b.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateSlicer.

private Slicer generateSlicer(ElementDefinition child, ElementDefinitionSlicingComponent slicing, StructureDefinition structure) {
    // given a child in a structure, it's sliced. figure out the slicing xpath
    if (child.getPath().endsWith(".extension")) {
        ElementDefinition ued = getUrlFor(structure, child);
        if ((ued == null || !ued.hasFixed()) && !(child.hasType() && (child.getType().get(0).hasProfile())))
            return new Slicer(false);
        else {
            Slicer s = new Slicer(true);
            String url = (ued == null || !ued.hasFixed()) ? child.getType().get(0).getProfile().get(0).getValue() : ((UriType) ued.getFixed()).asStringValue();
            s.name = " with URL = '" + url + "'";
            s.criteria = "[@url = '" + url + "']";
            return s;
        }
    } else
        return new Slicer(false);
}

Example 100 with UriType

use of org.hl7.fhir.r4b.model.UriType in project org.hl7.fhir.core by hapifhir.

the class TerminologyCache method getIncSummary.

private String getIncSummary(ConceptSetComponent cc) {
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    for (UriType vs : cc.getValueSet()) b.append(vs.asStringValue());
    String vsd = b.length() > 0 ? " where the codes are in the value sets (" + b.toString() + ")" : "";
    String system = cc.getSystem();
    if (cc.hasConcept())
        return Integer.toString(cc.getConcept().size()) + " codes from " + system + vsd;
    if (cc.hasFilter()) {
        String s = "";
        for (ConceptSetFilterComponent f : cc.getFilter()) {
            if (!Utilities.noString(s))
                s = s + " & ";
            s = s + f.getProperty() + " " + f.getOp().toCode() + " " + f.getValue();
        }
        return "from " + system + " where " + s + vsd;
    }
    return "All codes from " + system + vsd;
}