Examples with CapabilityStatementComparison org.hl7.fhir.r5.comparison.CapabilityStatementComparer.CapabilityStatementComparison used on opensource projects

Example 31 with CapabilityStatementComparison

use of org.hl7.fhir.r5.comparison.CapabilityStatementComparer.CapabilityStatementComparison in project org.hl7.fhir.core by hapifhir.

the class CapabilityStatementComparer method compareSearchParams.

private void compareSearchParams(StructuralMatch<Element> combined, List<CapabilityStatementRestResourceSearchParamComponent> left, List<CapabilityStatementRestResourceSearchParamComponent> right, String path, CapabilityStatementComparison res, List<CapabilityStatementRestResourceSearchParamComponent> union, List<CapabilityStatementRestResourceSearchParamComponent> intersection) {
    List<CapabilityStatementRestResourceSearchParamComponent> matchR = new ArrayList<>();
    for (CapabilityStatementRestResourceSearchParamComponent l : left) {
        CapabilityStatementRestResourceSearchParamComponent r = findInList(right, l);
        if (r == null) {
            union.add(l);
            combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this Search Parameter", path)));
        } else {
            matchR.add(r);
            CapabilityStatementRestResourceSearchParamComponent cdM = mergeSearchParams(l, r);
            CapabilityStatementRestResourceSearchParamComponent cdI = intersectSearchParams(l, r);
            union.add(cdM);
            intersection.add(cdI);
            StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
            compareStrings(path, sm.getMessages(), l.getDocumentation(), r.getDocumentation(), "documentation", IssueSeverity.INFORMATION, res);
            compareItemProperty(sm, "type", l.getTypeElement(), r.getTypeElement(), path, res, cdM.getTypeElement(), cdI.getTypeElement(), IssueSeverity.ERROR);
            compareItemProperty(sm, "definition", l.getDefinitionElement(), r.getDefinitionElement(), path, res, cdM.getDefinitionElement(), cdI.getDefinitionElement(), IssueSeverity.ERROR);
            compareExpectations(sm, l, r, path, res, cdM, cdI);
            combined.getChildren().add(sm);
        }
    }
    for (CapabilityStatementRestResourceSearchParamComponent r : right) {
        if (!matchR.contains(r)) {
            union.add(r);
            combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this Search Parameter", path), r));
        }
    }
}

Example 32 with CapabilityStatementComparison

use of org.hl7.fhir.r5.comparison.CapabilityStatementComparer.CapabilityStatementComparison in project org.hl7.fhir.core by hapifhir.

the class ComparisonTests method test.

@ParameterizedTest(name = "{index}: id {0}")
@MethodSource("data")
public void test(String name, JsonObject content) throws Exception {
    this.content = content;
    if (content.has("use-test") && !content.get("use-test").getAsBoolean())
        return;
    if (context == null) {
        System.out.println("---- Load R5 ----------------------------------------------------------------");
        context = TestingUtilities.getSharedWorkerContext();
        FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
        NpmPackage npm = pcm.loadPackage("hl7.fhir.us.core#3.1.0");
        BaseWorkerContext bc = (BaseWorkerContext) context;
        boolean dupl = bc.isAllowLoadingDuplicates();
        bc.setAllowLoadingDuplicates(true);
        context.loadFromPackage(npm, new R4ToR5Loader(new String[] { "CapabilityStatement", "StructureDefinition", "ValueSet", "CodeSystem", "SearchParameter", "OperationDefinition", "Questionnaire", "ConceptMap", "StructureMap", "NamingSystem" }, new NullLoaderKnowledgeProviderR5(), context.getVersion()));
        bc.setAllowLoadingDuplicates(dupl);
    }
    if (!new File(Utilities.path("[tmp]", "comparison")).exists()) {
        System.out.println("---- Set up Output ----------------------------------------------------------");
        Utilities.createDirectory(Utilities.path("[tmp]", "comparison"));
        FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
        NpmPackage npm = pcm.loadPackage(CommonPackages.ID_PUBPACK, CommonPackages.VER_PUBPACK);
        for (String f : npm.list("other")) {
            TextFile.streamToFile(npm.load("other", f), Utilities.path("[tmp]", "comparison", f));
        }
    }
    System.out.println("---- " + name + " ----------------------------------------------------------------");
    CanonicalResource left = load("left");
    CanonicalResource right = load("right");
    ComparisonSession session = new ComparisonSession(context, context, "Comparison Tests", null);
    if (left instanceof CodeSystem && right instanceof CodeSystem) {
        CodeSystemComparer cs = new CodeSystemComparer(session);
        CodeSystemComparison csc = cs.compare((CodeSystem) left, (CodeSystem) right);
        Assertions.assertTrue(csc.getUnion().getConcept().size() > csc.getIntersection().getConcept().size());
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-union.json")), csc.getUnion());
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-intersection.json")), csc.getIntersection());
        String xmle = new XhtmlComposer(true).compose(cs.renderErrors(csc));
        String xml1 = new XhtmlComposer(true).compose(cs.renderMetadata(csc, "", ""));
        String xml2 = new XhtmlComposer(true).compose(cs.renderConcepts(csc, "", ""));
        TextFile.stringToFile(HEADER + hd("Messages") + xmle + BREAK + hd("Metadata") + xml1 + BREAK + hd("Concepts") + xml2 + FOOTER, Utilities.path("[tmp]", "comparison", name + ".html"));
        checkOutcomes(csc.getMessages(), content);
    } else if (left instanceof ValueSet && right instanceof ValueSet) {
        ValueSetComparer cs = new ValueSetComparer(session);
        ValueSetComparison csc = cs.compare((ValueSet) left, (ValueSet) right);
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-union.json")), csc.getUnion());
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-intersection.json")), csc.getIntersection());
        String xmle = new XhtmlComposer(true).compose(cs.renderErrors(csc));
        String xml1 = new XhtmlComposer(true).compose(cs.renderMetadata(csc, "", ""));
        String xml2 = new XhtmlComposer(true).compose(cs.renderCompose(csc, "", ""));
        String xml3 = new XhtmlComposer(true).compose(cs.renderExpansion(csc, "", ""));
        TextFile.stringToFile(HEADER + hd("Messages") + xmle + BREAK + hd("Metadata") + xml1 + BREAK + hd("Definition") + xml2 + BREAK + hd("Expansion") + xml3 + FOOTER, Utilities.path("[tmp]", "comparison", name + ".html"));
        checkOutcomes(csc.getMessages(), content);
    } else if (left instanceof StructureDefinition && right instanceof StructureDefinition) {
        ProfileUtilities utils = new ProfileUtilities(context, null, null);
        genSnapshot(utils, (StructureDefinition) left);
        genSnapshot(utils, (StructureDefinition) right);
        ProfileComparer pc = new ProfileComparer(session, utils, utils);
        ProfileComparison csc = pc.compare((StructureDefinition) left, (StructureDefinition) right);
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-union.json")), csc.getUnion());
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-intersection.json")), csc.getIntersection());
        String xmle = new XhtmlComposer(true).compose(pc.renderErrors(csc));
        String xml1 = new XhtmlComposer(true).compose(pc.renderMetadata(csc, "", ""));
        String xml2 = new XhtmlComposer(true).compose(pc.renderStructure(csc, "", "", "http://hl7.org/fhir"));
        // String xml3 = new XhtmlComposer(true).compose(cs.renderExpansion(csc, "", ""));
        TextFile.stringToFile(HEADER + hd("Messages") + xmle + BREAK + hd("Metadata") + xml1 + BREAK + hd("Structure") + xml2 + FOOTER, Utilities.path("[tmp]", "comparison", name + ".html"));
        checkOutcomes(csc.getMessages(), content);
    } else if (left instanceof CapabilityStatement && right instanceof CapabilityStatement) {
        CapabilityStatementComparer pc = new CapabilityStatementComparer(session);
        CapabilityStatementComparison csc = pc.compare((CapabilityStatement) left, (CapabilityStatement) right);
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-union.json")), csc.getUnion());
        new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-intersection.json")), csc.getIntersection());
        String xmle = new XhtmlComposer(true).compose(pc.renderErrors(csc));
        String xml1 = new XhtmlComposer(true).compose(pc.renderMetadata(csc, "", ""));
        String xml2 = new XhtmlComposer(true).compose(pc.renderStatements(csc, "", ""));
        // String xml3 = new XhtmlComposer(true).compose(cs.renderExpansion(csc, "", ""));
        TextFile.stringToFile(HEADER + hd("Messages") + xmle + BREAK + hd("Metadata") + xml1 + BREAK + hd("Structure") + xml2 + FOOTER, Utilities.path("[tmp]", "comparison", name + ".html"));
        checkOutcomes(csc.getMessages(), content);
    } else {
        throw new FHIRException("Can't compare " + left.fhirType() + " to " + right.fhirType());
    }
}

Example 33 with CapabilityStatementComparison

use of org.hl7.fhir.r5.comparison.CapabilityStatementComparer.CapabilityStatementComparison in project org.hl7.fhir.core by hapifhir.

the class CapabilityStatementComparer method addRestSecurityRow.

private Row addRestSecurityRow(HierarchicalTableGenerator gen, List<Row> rows, StructuralMatch<Element> t, CapabilityStatementComparison comparison) {
    Row r = gen.new Row();
    rows.add(r);
    r.getCells().add(gen.new Cell(null, null, "security", null, null));
    CapabilityStatementRestSecurityComponent left = t.hasLeft() ? (CapabilityStatementRestSecurityComponent) t.getLeft() : null;
    CapabilityStatementRestSecurityComponent right = t.hasRight() ? (CapabilityStatementRestSecurityComponent) t.getRight() : null;
    r.getCells().add(style(gen.new Cell(null, null, left != null ? left.getCorsElement().primitiveValue() : "", null, null), left != null ? left.getCorsElement().primitiveValue() : null, right != null ? right.getCorsElement().primitiveValue() : null, true));
    r.getCells().add(style(gen.new Cell(null, null, left != null ? left.getDescription() : "", null, null), left != null ? left.getDescription() : null, right != null ? right.getDescription() : null, true));
    r.getCells().add(style(gen.new Cell(null, null, right != null ? right.getCorsElement().primitiveValue() : "", null, null), left != null ? left.getCorsElement().primitiveValue() : null, right != null ? right.getCorsElement().primitiveValue() : null, false));
    r.getCells().add(style(gen.new Cell(null, null, right != null ? right.getDescription() : "", null, null), left != null ? left.getDescription() : null, right != null ? right.getDescription() : null, true));
    r.getCells().add(cellForMessages(gen, t.getMessages()));
    return r;
}

Example 34 with CapabilityStatementComparison

use of org.hl7.fhir.r5.comparison.CapabilityStatementComparer.CapabilityStatementComparison in project org.hl7.fhir.core by hapifhir.

the class CapabilityStatementComparer method compareRests.

private void compareRests(List<CapabilityStatementRestComponent> left, List<CapabilityStatementRestComponent> right, StructuralMatch<Element> combined, List<CapabilityStatementRestComponent> union, List<CapabilityStatementRestComponent> intersection, CapabilityStatement csU, CapabilityStatement csI, CapabilityStatementComparison res, String path) {
    List<CapabilityStatementRestComponent> matchR = new ArrayList<>();
    for (CapabilityStatementRestComponent l : left) {
        CapabilityStatementRestComponent r = findInList(right, l);
        if (r == null) {
            union.add(l);
            combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this item", path)));
        } else {
            matchR.add(r);
            CapabilityStatementRestComponent cdM = merge(l, r, res);
            CapabilityStatementRestComponent cdI = intersect(l, r, res);
            union.add(cdM);
            intersection.add(cdI);
            StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
            compare(sm, l, r, path + ".where(mode='" + l.getMode() + "')", res);
            combined.getChildren().add(sm);
            compareRestSecurity(l, r, sm, cdM.getSecurity(), cdI.getSecurity(), csU, csI, res, path + ".security");
            compareRestResources(l, r, sm, cdM, cdI, csU, csI, res, path + ".resource");
            compareSearchParams(combined, l.getSearchParam(), r.getSearchParam(), path, res, cdM.getSearchParam(), cdI.getSearchParam());
            compareOperations(combined, l.getOperation(), r.getOperation(), path, res, cdM.getOperation(), cdI.getOperation());
            compareItemPropertyList(sm, "compartment", l.getCompartment(), r.getCompartment(), path, res, cdM.getCompartment(), cdI.getCompartment(), IssueSeverity.ERROR);
        }
    }
    for (CapabilityStatementRestComponent r : right) {
        if (!matchR.contains(r)) {
            union.add(r);
            combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this concept", path), r));
        }
    }
}

Example 35 with CapabilityStatementComparison

use of org.hl7.fhir.r5.comparison.CapabilityStatementComparer.CapabilityStatementComparison in project org.hl7.fhir.core by hapifhir.

the class CapabilityStatementComparer method compareExpectations.

private void compareExpectations(StructuralMatch<Element> combined, Element left, Element right, String path, CapabilityStatementComparison res, Element union, Element intersection) {
    Extension l = left.getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation");
    Extension r = right.getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation");
    if (l != null || r != null) {
        if (l == null) {
            union.addExtension(r.copy());
            combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this expectation", path), r));
        } else if (r == null) {
            union.addExtension(l.copy());
            combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this expectation", path)));
        } else {
            StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
            combined.getChildren().add(sm);
            String ls = l.getValue().primitiveValue();
            String rs = r.getValue().primitiveValue();
            if (ls.equals(rs)) {
                union.addExtension(l.copy());
                intersection.addExtension(l.copy());
            } else {
                sm.getMessages().add(new ValidationMessage(Source.ProfileComparer, IssueType.INFORMATIONAL, path + ".extension('http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation')", "Changed value for expectation: '" + ls + "' vs '" + rs + "'", IssueSeverity.WARNING));
                String lowest = lower(ls, rs) ? ls : rs;
                String highest = lower(ls, rs) ? rs : ls;
                union.addExtension("http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation", new CodeType(lowest));
                intersection.addExtension("http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation", new CodeType(highest));
            }
        }
    }
}