Examples with ProfileUtilities org.hl7.fhir.r5.conformance.ProfileUtilities used on opensource projects

Example 56 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testMinValueChange.

/**
 * Change min value
 */
@Test
void testMinValueChange() {
    // Given
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Appointment").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Appointment.minutesDuration");
    id.setMinValue(new IntegerType(1));
    List<ValidationMessage> messages = new ArrayList<>();
    // When
    new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://test.org", "Simple Test");
    // Then
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            b.setRequirements(null);
            f.setRequirements(null);
            for (ElementDefinitionConstraintComponent c : b.getConstraint()) {
                c.setSource(null);
            }
            for (ElementDefinitionConstraintComponent c : f.getConstraint()) {
                c.setSource(null);
            }
            if (!f.hasBase() || !b.getPath().equals(f.getPath())) {
                ok = false;
            } else {
                if (f.getPath().equals("Appointment.minutesDuration")) {
                    ok = f.getMinValue() instanceof IntegerType && ((IntegerType) f.getMinValue()).getValue() == 1;
                    if (ok) {
                        // Can't set minValue to null so change base minValue to IntegerType(1)
                        b.setMinValue(new IntegerType(1));
                    }
                }
                if (!Base.compareDeep(b, f, true)) {
                    ok = false;
                }
            }
        }
    }
    Assertions.assertTrue(ok);
}

Example 57 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ValidationTests method loadProfile.

public StructureDefinition loadProfile(String filename, String contents, List<ValidationMessage> messages, boolean debug) throws IOException, FHIRFormatError, FileNotFoundException, FHIRException, DefinitionException {
    StructureDefinition sd = (StructureDefinition) loadResource(filename, contents);
    ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(version), messages, null);
    pu.setDebug(debug);
    if (!sd.hasSnapshot()) {
        StructureDefinition base = TestingUtilities.getSharedWorkerContext(version).fetchResource(StructureDefinition.class, sd.getBaseDefinition());
        pu.generateSnapshot(base, sd, sd.getUrl(), null, sd.getTitle());
    // (debugging)      new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", sd.getId()+".xml")), sd);
    }
    for (Resource r : sd.getContained()) {
        if (r instanceof StructureDefinition) {
            StructureDefinition childSd = (StructureDefinition) r;
            if (!childSd.hasSnapshot()) {
                StructureDefinition base = TestingUtilities.getSharedWorkerContext(version).fetchResource(StructureDefinition.class, childSd.getBaseDefinition());
                pu.generateSnapshot(base, childSd, childSd.getUrl(), null, childSd.getTitle());
            }
        }
    }
    return sd;
}

Example 58 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ComparisonTests method genSnapshot.

private void genSnapshot(ProfileUtilities utils, StructureDefinition sd) {
    StructureDefinition base = context.fetchTypeDefinition(sd.getType());
    utils.generateSnapshot(base, sd, sd.getUrl(), "http://hl7.org/fhir/r4", sd.present());
}

Example 59 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationXTests method testGen.

private void testGen(boolean fail, TestDetails test) throws Exception {
    if (!Utilities.noString(test.register)) {
        List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
        ProfileUtilities pu = new ProfileUtilities(UtilitiesXTests.context(version), messages, null);
        pu.setNewSlicingProcessing(true);
        pu.setIds(test.included, false);
        StructureDefinition base = UtilitiesXTests.context(version).fetchResource(StructureDefinition.class, test.included.getBaseDefinition());
        if (base != null) {
            pu.generateSnapshot(base, test.included, test.included.getUrl(), "http://test.org/profile", test.included.getName());
        }
        if (!UtilitiesXTests.context(version).hasResource(StructureDefinition.class, test.included.getUrl()))
            UtilitiesXTests.context(version).cacheResource(test.included);
        int ec = 0;
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                System.out.println(vm.summary());
                ec++;
            }
        }
        if (ec > 0)
            throw new FHIRException("register gen failed: " + messages.toString());
    }
    StructureDefinition base = getSD(test.getSource().getBaseDefinition());
    if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
        throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
    StructureDefinition output = test.getSource().copy();
    ProfileUtilities pu = new ProfileUtilities(UtilitiesXTests.context(version), messages, new TestPKP());
    pu.setNewSlicingProcessing(test.isNewSliceProcessing());
    pu.setThrowException(false);
    pu.setDebug(test.isDebug());
    pu.setIds(test.getSource(), false);
    if (test.isSort()) {
        List<String> errors = new ArrayList<String>();
        int lastCount = output.getDifferential().getElement().size();
        pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
        if (errors.size() > 0)
            throw new FHIRException("Sort failed: " + errors.toString());
    }
    try {
        messages.clear();
        pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
        List<ValidationMessage> ml = new ArrayList<>();
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                ml.add(vm);
            }
        }
        if (ml.size() > 0) {
            throw new FHIRException("Snapshot Generation failed: " + ml.toString());
        }
    } catch (Throwable e) {
        System.out.println("\r\nException: " + e.getMessage());
        throw e;
    }
    if (output.getDifferential().hasElement()) {
        RenderingContext rc = new RenderingContext(TestingUtilities.getSharedWorkerContext(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
        rc.setDestDir(makeTempDir());
        rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), null, new TestPKP()));
        RendererFactory.factory(output, rc).render(output);
    }
    if (!fail) {
        test.output = output;
        UtilitiesXTests.context(version).cacheResource(output);
        File dst = new File(UtilitiesXTests.tempFile("snapshot", test.getId() + "-expected.xml"));
        if (dst.exists())
            dst.delete();
        IOUtils.copy(UtilitiesXTests.loadTestResourceStream("rX", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
        new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(UtilitiesXTests.tempFile("snapshot", test.getId() + "-actual.xml")), output);
        StructureDefinition t1 = test.expected.copy();
        t1.setText(null);
        StructureDefinition t2 = test.output.copy();
        t2.setText(null);
        Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
    }
}

Example 60 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project dpc-app by CMSgov.

the class DPCProfileSupport method loadProfiles.

private Map<String, StructureDefinition> loadProfiles(FhirContext ctx) {
    logger.info("Loading resource profiles");
    final Map<String, StructureDefinition> definitionMap = new HashMap<>();
    // Generate a validator to pull the base definitions from.
    final DefaultProfileValidationSupport defaultValidation = new DefaultProfileValidationSupport();
    final HapiWorkerContext hapiWorkerContext = new HapiWorkerContext(ctx, defaultValidation);
    final ProfileUtilities profileUtilities = new ProfileUtilities(hapiWorkerContext, new ArrayList<>(), null);
    final IParser parser = ctx.newJsonParser();
    ServiceLoaderHelpers.getLoaderStream(IProfileLoader.class).map(profileLoader -> toStructureDefinition(parser, profileLoader.getPath())).filter(Objects::nonNull).map(diffStructure -> mergeDiff(ctx, defaultValidation, profileUtilities, diffStructure)).forEach(structure -> definitionMap.put(structure.getUrl(), structure));
    return definitionMap;
}