Examples with ProfileUtilities org.hl7.fhir.r5.conformance.ProfileUtilities used on opensource projects

Example 41 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSimple.

// /**
// * This is simple: we just create an empty differential, generate the snapshot, and then insist it must match the base
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
@Test
public void testSimple() throws FHIRException, FileNotFoundException, IOException, UcumException {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType("Patient");
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://hl7.org/fhir/R4", "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        ElementDefinition b = base.getSnapshot().getElement().get(i);
        ElementDefinition f = focus.getSnapshot().getElement().get(i);
        if (ok) {
            if (!f.hasBase())
                ok = false;
            else if (!b.getPath().equals(f.getPath()))
                ok = false;
            else {
                b.setBase(null);
                f.setBase(null);
                ok = Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation simple test failed");
    } else
        System.out.println("Snap shot generation simple test passed");
}

Example 42 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSimple2.

// 
// /**
// * This is simple: we just create an empty differential, generate the snapshot, and then insist it must match the base. for a different resource with recursion
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
@Test
public void testSimple2() throws EOperationOutcome, Exception {
    StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/ValueSet").copy();
    StructureDefinition focus = base.copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setSnapshot(null);
    focus.setDifferential(null);
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://hl7.org/fhir/R4", "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getPath()))
                ok = false;
            else {
                f.setBase(null);
                b.setBase(null);
                ok = Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        System.out.println("Snap shot generation simple test failed");
        throw new FHIRException("Snap shot generation simple test failed");
    } else
        System.out.println("Snap shot generation simple test passed");
}

Example 43 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ComparisonRenderer method renderProfile.

private void renderProfile(String id, ProfileComparison comp) throws IOException {
    String template = templates.get("Profile");
    Map<String, Base> vars = new HashMap<>();
    ProfileComparer cs = new ProfileComparer(session, new ProfileUtilities(session.getContextLeft(), null, session.getPkp()), new ProfileUtilities(session.getContextRight(), null, session.getPkp()));
    vars.put("left", new StringType(comp.getLeft().present()));
    vars.put("right", new StringType(comp.getRight().present()));
    vars.put("leftId", new StringType(comp.getLeft().getId()));
    vars.put("rightId", new StringType(comp.getRight().getId()));
    vars.put("leftUrl", new StringType(comp.getLeft().getUrl()));
    vars.put("rightUrl", new StringType(comp.getRight().getUrl()));
    vars.put("errors", new StringType(new XhtmlComposer(true).compose(cs.renderErrors(comp))));
    vars.put("metadata", new StringType(new XhtmlComposer(true).compose(cs.renderMetadata(comp, "", ""))));
    vars.put("structure", new StringType(new XhtmlComposer(true).compose(cs.renderStructure(comp, "", "", "http://hl7.org/fhir"))));
    String cnt = processTemplate(template, "CodeSystem", vars);
    TextFile.stringToFile(cnt, file(comp.getId() + ".html"));
    new org.hl7.fhir.r4b.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(folder, comp.getId() + "-union.json")), comp.getUnion());
    new org.hl7.fhir.r4b.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(folder, comp.getId() + "-intersection.json")), comp.getIntersection());
}

Example 44 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method getSD.

private StructureDefinition getSD(String url, SnapShotGenerationTestsContext context) throws DefinitionException, FHIRException, IOException {
    StructureDefinition sd = context.getByUrl(url);
    if (sd == null)
        sd = TestingUtilities.context().fetchResource(StructureDefinition.class, url);
    if (!sd.hasSnapshot()) {
        StructureDefinition base = getSD(sd.getBaseDefinition(), context);
        ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), messages, new TestPKP());
        pu.setNewSlicingProcessing(true);
        List<String> errors = new ArrayList<String>();
        pu.sortDifferential(base, sd, url, errors);
        if (!errors.isEmpty())
            throw new FHIRException(errors.get(0));
        pu.setIds(sd, false);
        pu.generateSnapshot(base, sd, sd.getUrl(), "http://test.org/profile", sd.getName());
    }
    return sd;
}

Example 45 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ComparisonSession method compare.

public ResourceComparison compare(CanonicalResource left, CanonicalResource right) throws DefinitionException, FHIRFormatError, IOException {
    if (left != null && right != null) {
        String key = key(left.getUrl(), left.getVersion(), right.getUrl(), right.getVersion());
        if (compares.containsKey(key)) {
            // this can happen when profiles refer to each other
            return compares.get(key);
        }
        compares.put(key, null);
        try {
            if (left instanceof CodeSystem && right instanceof CodeSystem) {
                CodeSystemComparer cs = new CodeSystemComparer(this);
                CodeSystemComparison csc = cs.compare((CodeSystem) left, (CodeSystem) right);
                compares.put(key, csc);
                return csc;
            } else if (left instanceof ValueSet && right instanceof ValueSet) {
                ValueSetComparer cs = new ValueSetComparer(this);
                ValueSetComparison csc = cs.compare((ValueSet) left, (ValueSet) right);
                compares.put(key, csc);
                return csc;
            } else if (left instanceof StructureDefinition && right instanceof StructureDefinition) {
                ProfileComparer cs = new ProfileComparer(this, new ProfileUtilities(contextLeft, null, pkp), new ProfileUtilities(contextRight, null, pkp));
                ProfileComparison csc = cs.compare((StructureDefinition) left, (StructureDefinition) right);
                compares.put(key, csc);
                return csc;
            } else {
                throw new FHIRException("Unable to compare resources of type " + left.fhirType() + " and " + right.fhirType());
            }
        } catch (Throwable e) {
            ResourceComparer.PlaceHolderComparison csc = new ResourceComparer.PlaceHolderComparison(left, right, e);
            compares.put(key, csc);
            return csc;
        }
    } else if (left != null) {
        String key = key(left.getUrl(), left.getVersion(), left.getUrl(), left.getVersion());
        if (compares.containsKey(key)) {
            return compares.get(key);
        }
        ResourceComparer.PlaceHolderComparison csc = new ResourceComparer.PlaceHolderComparison(left, right);
        compares.put(key, csc);
        return csc;
    } else {
        String key = key(right.getUrl(), right.getVersion(), right.getUrl(), right.getVersion());
        if (compares.containsKey(key)) {
            return compares.get(key);
        }
        ResourceComparer.PlaceHolderComparison csc = new ResourceComparer.PlaceHolderComparison(left, right);
        compares.put(key, csc);
        return csc;
    }
}