Examples with ProfileUtilities org.hl7.fhir.r5.conformance.ProfileUtilities used on opensource projects

Example 31 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSlicingTask8742.

private void testSlicingTask8742() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Organization").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Organization.address");
    id.setMin(1);
    id.setMax("1");
    id.setMustSupport(true);
    id = focus.getDifferential().addElement();
    id.setPath("Organization.address.extension");
    id.setSliceName("USLabCountycodes");
    id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
    id.setShort("County/Parish FIPS codes");
    id.setDefinition("County/Parish FIPS codes.");
    id.setRequirements("County/Parish Code SHALL use FIPS 6-4  ( INCITS 31:2009).");
    id.setMin(0);
    id.setMax("1");
    id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/us-core-county");
    id.setMustSupport(true);
    id.getBinding().setStrength(BindingStrength.REQUIRED).setDescription("FIPS codes for US counties and county equivalent entities.").setValueSet(new Reference().setReference("http://hl7.org/fhir/ValueSet/fips-county"));
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    // 14 for address with one sliced extension
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 13;
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation test 8742 failed");
    } else
        System.out.println("Snap shot generation test 8742 passed");
}

Example 32 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method findContainedProfile.

private StructureDefinition findContainedProfile(String url, SnapShotGenerationTestsContext context) throws DefinitionException, FHIRException {
    for (Resource r : context.tests.getContained()) {
        if (r instanceof StructureDefinition) {
            StructureDefinition sd = (StructureDefinition) r;
            if (sd.getUrl().equals(url)) {
                StructureDefinition p = sd.copy();
                ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context, null, null);
                pu.setIds(p, false);
                pu.generateSnapshot(getSD(p.getBaseDefinition(), context), p, p.getUrl(), p.getName());
                return p;
            }
        }
    }
    return null;
}

Example 33 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContext method generateSnapshot.

@Override
public void generateSnapshot(StructureDefinition p, boolean logical) throws DefinitionException, FHIRException {
    if ((!p.hasSnapshot() || isProfileNeedsRegenerate(p)) && (logical || p.getKind() != StructureDefinitionKind.LOGICAL)) {
        if (!p.hasBaseDefinition())
            throw new DefinitionException(formatMessage(I18nConstants.PROFILE___HAS_NO_BASE_AND_NO_SNAPSHOT, p.getName(), p.getUrl()));
        StructureDefinition sd = fetchResource(StructureDefinition.class, p.getBaseDefinition());
        if (sd == null && "http://hl7.org/fhir/StructureDefinition/Base".equals(p.getBaseDefinition())) {
            sd = ProfileUtilities.makeBaseDefinition(p.getFhirVersion());
        }
        if (sd == null) {
            throw new DefinitionException(formatMessage(I18nConstants.PROFILE___BASE__COULD_NOT_BE_RESOLVED, p.getName(), p.getUrl(), p.getBaseDefinition()));
        }
        List<ValidationMessage> msgs = new ArrayList<ValidationMessage>();
        List<String> errors = new ArrayList<String>();
        ProfileUtilities pu = new ProfileUtilities(this, msgs, this);
        pu.setAutoFixSliceNames(true);
        pu.setThrowException(false);
        if (xverManager == null) {
            xverManager = new XVerExtensionManager(this);
        }
        pu.setXver(xverManager);
        if (sd.getDerivation() == TypeDerivationRule.CONSTRAINT) {
            pu.sortDifferential(sd, p, p.getUrl(), errors, true);
        }
        pu.setDebug(false);
        for (String err : errors) msgs.add(new ValidationMessage(Source.ProfileValidator, IssueType.EXCEPTION, p.getUserString("path"), "Error sorting Differential: " + err, ValidationMessage.IssueSeverity.ERROR));
        pu.generateSnapshot(sd, p, p.getUrl(), Utilities.extractBaseUrl(sd.getUserString("path")), p.getName());
        for (ValidationMessage msg : msgs) {
            if ((!ignoreProfileErrors && msg.getLevel() == ValidationMessage.IssueSeverity.ERROR) || msg.getLevel() == ValidationMessage.IssueSeverity.FATAL)
                throw new DefinitionException(formatMessage(I18nConstants.PROFILE___ELEMENT__ERROR_GENERATING_SNAPSHOT_, p.getName(), p.getUrl(), msg.getLocation(), msg.getMessage()));
        }
        if (!p.hasSnapshot())
            throw new FHIRException(formatMessage(I18nConstants.PROFILE___ERROR_GENERATING_SNAPSHOT, p.getName(), p.getUrl()));
        pu = null;
    }
}

Example 34 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method selectTypes.

private void selectTypes(StructureDefinition profile, QuestionnaireItemComponent sub, TypeRefComponent t, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> source, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> dest) throws FHIRFormatError {
    List<QuestionnaireResponse.QuestionnaireResponseItemComponent> temp = new ArrayList<QuestionnaireResponse.QuestionnaireResponseItemComponent>();
    for (QuestionnaireResponse.QuestionnaireResponseItemComponent g : source) if (instanceOf(t, (Element) g.getUserData("object")))
        temp.add(g);
    for (QuestionnaireResponse.QuestionnaireResponseItemComponent g : temp) source.remove(g);
    for (QuestionnaireResponse.QuestionnaireResponseItemComponent g : temp) {
        // it should be empty
        assert (g.getItem().size() == 0);
        QuestionnaireResponse.QuestionnaireResponseItemComponent q = g.addItem();
        q.setLinkId(g.getLinkId() + "._type");
        q.setText("type");
        QuestionnaireResponseItemAnswerComponent a = q.addAnswer();
        if (t.hasTarget()) {
            for (UriType u : t.getTargetProfile()) {
                if (u.getValue().startsWith("http://hl7.org/fhir/StructureDefinition/")) {
                    Coding cc = new Coding();
                    a.setValue(cc);
                    cc.setCode(u.getValue().substring(40));
                    cc.setSystem("http://hl7.org/fhir/resource-types");
                }
            }
        } else {
            Coding cc = new Coding();
            a.setValue(cc);
            ProfileUtilities pu = new ProfileUtilities(context, null, null);
            StructureDefinition ps = null;
            if (t.hasProfile())
                ps = pu.getProfile(profile, t.getProfile().get(0).getValue());
            if (ps != null) {
                cc.setCode(t.getProfile().get(0).getValue());
                cc.setSystem("http://hl7.org/fhir/resource-types");
            } else {
                cc.setCode(t.getWorkingCode());
                cc.setSystem("http://hl7.org/fhir/data-types");
            }
        }
        // 1st: create the subgroup
        QuestionnaireResponse.QuestionnaireResponseItemComponent subg = a.addItem();
        dest.add(subg);
        subg.setLinkId(sub.getLinkId());
        subg.setText(sub.getText());
        subg.setUserData("object", g.getUserData("object"));
    }
}

Example 35 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method makeTypeList.

private ValueSet makeTypeList(StructureDefinition profile, List<TypeRefComponent> types, String path) {
    ValueSet vs = new ValueSet();
    vs.setName("Type options for " + path);
    vs.setDescription(vs.present());
    vs.setStatus(PublicationStatus.ACTIVE);
    vs.setExpansion(new ValueSetExpansionComponent());
    vs.getExpansion().setIdentifier(Factory.createUUID());
    vs.getExpansion().setTimestampElement(DateTimeType.now());
    for (TypeRefComponent t : types) {
        if (t.hasTarget()) {
            for (UriType u : t.getTargetProfile()) {
                if (u.getValue().startsWith("http://hl7.org/fhir/StructureDefinition/")) {
                    ValueSetExpansionContainsComponent cc = vs.getExpansion().addContains();
                    cc.setCode(u.getValue().substring(40));
                    cc.setSystem("http://hl7.org/fhir/resource-types");
                    cc.setDisplay(cc.getCode());
                }
            }
        } else if (!t.hasProfile()) {
            ValueSetExpansionContainsComponent cc = vs.getExpansion().addContains();
            cc.setCode(t.getWorkingCode());
            cc.setDisplay(t.getWorkingCode());
            cc.setSystem("http://hl7.org/fhir/data-types");
        } else
            for (UriType u : t.getProfile()) {
                ProfileUtilities pu = new ProfileUtilities(context, null, null);
                StructureDefinition ps = pu.getProfile(profile, u.getValue());
                if (ps != null) {
                    ValueSetExpansionContainsComponent cc = vs.getExpansion().addContains();
                    cc.setCode(u.getValue());
                    cc.setDisplay(ps.getType());
                    cc.setSystem("http://hl7.org/fhir/resource-types");
                }
            }
    }
    return vs;
}