Examples with ProfileUtilities org.hl7.fhir.r5.conformance.ProfileUtilities used on opensource projects

Example 26 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContext method seeProfile.

private void seeProfile(String url, StructureDefinition p) throws FHIRException {
    if (Utilities.noString(url))
        url = p.getUrl();
    if (!p.hasSnapshot()) {
        if (!p.hasBaseDefinition())
            throw new DefinitionException("Profile " + p.getName() + " (" + p.getUrl() + ") has no base and no snapshot");
        StructureDefinition sd = fetchResource(StructureDefinition.class, p.getBaseDefinition());
        if (sd == null)
            throw new DefinitionException("Profile " + p.getName() + " (" + p.getUrl() + ") base " + p.getBaseDefinition() + " could not be resolved");
        List<ValidationMessage> msgs = new ArrayList<ValidationMessage>();
        ProfileUtilities pu = new ProfileUtilities(this, msgs, this);
        pu.generateSnapshot(sd, p, p.getUrl(), p.getName());
        for (ValidationMessage msg : msgs) {
            if (msg.getLevel() == IssueSeverity.ERROR || msg.getLevel() == IssueSeverity.FATAL)
                throw new DefinitionException("Profile " + p.getName() + " (" + p.getUrl() + "). Error generating snapshot: " + msg.getMessage());
        }
        if (!p.hasSnapshot())
            throw new DefinitionException("Profile " + p.getName() + " (" + p.getUrl() + "). Error generating snapshot");
        pu = null;
    }
    if (structures.containsKey(p.getUrl()))
        throw new DefinitionException("Duplicate structures " + p.getUrl());
    structures.put(p.getId(), p);
    structures.put(p.getUrl(), p);
    if (!p.getUrl().equals(url))
        structures.put(url, p);
}

Example 27 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generate.

public boolean generate(ResourceContext rcontext, StructureDefinition sd, java.util.Set<String> outputTracker) throws EOperationOutcome, FHIRException, IOException {
    ProfileUtilities pu = new ProfileUtilities(context, null, pkp);
    XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
    x.getChildNodes().add(pu.generateTable(definitionsTarget, sd, true, destDir, false, sd.getId(), false, corePath, "", false, false, outputTracker));
    inject(sd, x, NarrativeStatus.GENERATED);
    return true;
}

Example 28 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testCardinalityChange.

/**
 * Change one cardinality.
 *
 * @param context2
 * @
 * @throws EOperationOutcome
 */
private void testCardinalityChange() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setMin(1);
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.identifier")) {
                    ok = f.getMin() == 1;
                    if (ok)
                        f.setMin(0);
                }
                ok = ok && Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation chenge cardinality test failed");
    } else
        System.out.println("Snap shot generation chenge cardinality test passed");
}

Example 29 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSlicingExtension.

/**
 * we're going to slice Patient.extension and refer to extension by profile
 *
 * implicit: whether to rely on implicit extension slicing
 */
private void testSlicingExtension(boolean implicit) throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    // set the slice up
    ElementDefinition id;
    if (!implicit) {
        id = focus.getDifferential().addElement();
        id.setPath("Patient.extension");
        id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
        id.setMax("3");
    }
    // first slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.extension");
    id.setSliceName("name1");
    id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-birthTime");
    id.setMin(1);
    // second slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.extension");
    id.setSliceName("name2");
    id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    ProfileUtilities pu = new ProfileUtilities(context, messages, null);
    pu.generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    // 2 different: extension slices
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 2;
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i <= 7 ? i : i + 2);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.extension")) {
                    ok = f.hasSlicing() && (implicit || f.getMax().equals("3"));
                    if (ok) {
                        f.setSlicing(null);
                        f.setMaxElement(b.getMaxElement());
                    }
                }
                if (// no compare that because the definitions get overwritten
                !f.getPath().equals("Patient.extension"))
                    ok = Base.compareDeep(b, f, true);
            }
        }
    }
    // now, check that the slices we skipped are correct:
    if (ok) {
        ElementDefinition d1 = focus.getSnapshot().getElement().get(8);
        ElementDefinition d2 = focus.getSnapshot().getElement().get(9);
        ok = d1.hasType() && d1.getType().get(0).hasProfile() && d2.hasType() && d2.getType().get(0).hasProfile() && !Base.compareDeep(d1.getType(), d2.getType(), true) && d1.getMin() == 1 && d2.getMin() == 0 && d1.getMax().equals("1") && d2.getMax().equals("1");
        if (ok) {
            d1.getType().clear();
            d2.getType().clear();
            d1.setSliceName("x");
            d2.setSliceName("x");
            d1.setMin(0);
        }
        ok = Base.compareDeep(d1, d2, true);
    // for throughness, we could check against extension too, but this is not done now.
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation slicing extensions simple (" + (implicit ? "implicit" : "not implicit") + ") failed");
    } else
        System.out.println("Snap shot generation slicing extensions simple (" + (implicit ? "implicit" : "not implicit") + ") passed");
}

Example 30 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSlicingSimple.

/**
 * we're going to slice Patient.identifier
 */
private void testSlicingSimple() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    // set the slice up
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("use").setType(DiscriminatorType.VALUE);
    // first slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setSliceName("name1");
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier.use");
    id.setFixed(new CodeType("usual"));
    // second slice:
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setSliceName("name2");
    id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier.use");
    id.setFixed(new CodeType("official"));
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    // 18 different: identifier + 8 inner children * 2
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 18;
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i <= 9 ? i : i + 18);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.identifier")) {
                    ok = f.hasSlicing();
                    if (ok)
                        f.setSlicing(null);
                }
                ok = Base.compareDeep(b, f, true);
            }
        }
    }
    // now, check that the slices we skipped are correct:
    for (int i = 10; i <= 18; i++) {
        if (ok) {
            ElementDefinition d1 = focus.getSnapshot().getElement().get(i);
            ElementDefinition d2 = focus.getSnapshot().getElement().get(i + 9);
            if (d1.getPath().equals("Patient.identifier.use")) {
                ok = d1.hasFixed() && d2.hasFixed() && !Base.compareDeep(d1.getFixed(), d2.getFixed(), true);
                if (ok) {
                    d1.setFixed(null);
                    d2.setFixed(null);
                }
            }
            if (d1.getPath().equals("Patient.identifier")) {
                ok = d1.hasSliceName() && d2.hasSliceName() && !Base.compareDeep(d1.getSliceNameElement(), d2.getSliceNameElement(), true);
                if (ok) {
                    d1.setSliceName(null);
                    d2.setSliceName(null);
                }
            }
            ok = Base.compareDeep(d1, d2, true);
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation slicing failed");
    } else
        System.out.println("Snap shot generation slicing passed");
}