Examples with PackageVersion org.hl7.fhir.r5.context.IWorkerContext.PackageVersion used on opensource projects

Example 1 with PackageVersion

use of org.hl7.fhir.r5.context.IWorkerContext.PackageVersion in project kindling by HL7.

the class BuildWorkerContext method loadFromPackageInt.

public int loadFromPackageInt(NpmPackage pi, IContextResourceLoader loader, String... types) throws FileNotFoundException, IOException, FHIRException {
    int t = 0;
    System.out.println("Load Package " + pi.name() + "#" + pi.version());
    if (loadedPackages.contains(pi.id() + "#" + pi.version())) {
        return 0;
    }
    loadedPackages.add(pi.id() + "#" + pi.version());
    if ((types == null || types.length == 0) && loader != null) {
        types = loader.getTypes();
    }
    for (PackageResourceInformation pri : pi.listIndexedResources(types)) {
        try {
            registerResourceFromPackage(new PackageResourceLoader(pri, loader), new PackageVersion(pi.id(), pi.version()));
            t++;
        } catch (FHIRException e) {
            throw new FHIRException(formatMessage(I18nConstants.ERROR_READING__FROM_PACKAGE__, pri.getFilename(), pi.name(), pi.version(), e.getMessage()), e);
        }
    }
    for (String s : pi.list("other")) {
        binaries.put(s, TextFile.streamToBytes(pi.load("other", s)));
    }
    if (version == null) {
        version = pi.version();
    }
    return t;
}

Example 2 with PackageVersion

use of org.hl7.fhir.r5.context.IWorkerContext.PackageVersion in project kindling by HL7.

the class CodeSystemConvertor method convert.

public void convert(IParser p, ValueSet vs, String name, PackageVersion packageInfo) throws Exception {
    String nname = name.replace("valueset-", "codesystem-");
    if (nname.equals(name))
        nname = Utilities.changeFileExt(name, "-cs.xml");
    if (new File(nname).exists()) {
        FileInputStream input = new FileInputStream(nname);
        CodeSystem cs = CodeSystemUtilities.makeShareable((CodeSystem) p.parse(input));
        if (!cs.hasTitle())
            cs.setTitle(Utilities.capitalize(Utilities.unCamelCase(cs.getName())));
        populate(cs, vs);
        // if (codeSystems.containsKey(cs.getUrl()))
        // throw new Exception("Duplicate Code System: "+cs.getUrl());
        codeSystems.see(cs, packageInfo);
    }
}

Example 3 with PackageVersion

use of org.hl7.fhir.r5.context.IWorkerContext.PackageVersion in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContext method loadFromPackageInt.

public int loadFromPackageInt(NpmPackage pi, IContextResourceLoader loader, String... types) throws FileNotFoundException, IOException, FHIRException {
    int t = 0;
    if (progress) {
        System.out.println("Load Package " + pi.name() + "#" + pi.version());
    }
    if (loadedPackages.contains(pi.id() + "#" + pi.version())) {
        return 0;
    }
    loadedPackages.add(pi.id() + "#" + pi.version());
    if ((types == null || types.length == 0) && loader != null) {
        types = loader.getTypes();
    }
    if (VersionUtilities.isR2Ver(pi.fhirVersion()) || !pi.canLazyLoad()) {
        // can't lazy load R2 because of valueset/codesystem implementation
        if (types.length == 0) {
            types = new String[] { "StructureDefinition", "ValueSet", "SearchParameter", "OperationDefinition", "Questionnaire", "ConceptMap", "StructureMap", "NamingSystem" };
        }
        for (String s : pi.listResources(types)) {
            try {
                loadDefinitionItem(s, pi.load("package", s), loader, null, new PackageVersion(pi.id(), pi.version()));
                t++;
            } catch (Exception e) {
                throw new FHIRException(formatMessage(I18nConstants.ERROR_READING__FROM_PACKAGE__, s, pi.name(), pi.version(), e.getMessage()), e);
            }
        }
    } else {
        if (types.length == 0) {
            types = new String[] { "StructureDefinition", "ValueSet", "CodeSystem", "SearchParameter", "OperationDefinition", "Questionnaire", "ConceptMap", "StructureMap", "NamingSystem", "Measures" };
        }
        for (PackageResourceInformation pri : pi.listIndexedResources(types)) {
            try {
                registerResourceFromPackage(new PackageResourceLoader(pri, loader), new PackageVersion(pi.id(), pi.version()));
                t++;
            } catch (FHIRException e) {
                throw new FHIRException(formatMessage(I18nConstants.ERROR_READING__FROM_PACKAGE__, pri.getFilename(), pi.name(), pi.version(), e.getMessage()), e);
            }
        }
    }
    for (String s : pi.list("other")) {
        binaries.put(s, TextFile.streamToBytes(pi.load("other", s)));
    }
    if (version == null) {
        version = pi.version();
    }
    return t;
}

Example 4 with PackageVersion

use of org.hl7.fhir.r5.context.IWorkerContext.PackageVersion in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method registerResourceFromPackage.

public void registerResourceFromPackage(CanonicalResourceProxy r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        if (r.getId() != null) {
            Map<String, ResourceProxy> map = allResourcesById.get(r.getType());
            if (map == null) {
                map = new HashMap<String, ResourceProxy>();
                allResourcesById.put(r.getType(), map);
            }
            if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
                map.put(r.getId(), new ResourceProxy(r));
            }
        }
        String url = r.getUrl();
        if (!allowLoadingDuplicates && hasResource(r.getType(), url)) {
            // spcial workaround for known problems with existing packages
            if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                return;
            }
            throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
        }
        switch(r.getType()) {
            case "StructureDefinition":
                if ("1.4.0".equals(version)) {
                    StructureDefinition sd = (StructureDefinition) r.getResource();
                    fixOldSD(sd);
                }
                structures.register(r, packageInfo);
                break;
            case "ValueSet":
                valueSets.register(r, packageInfo);
                break;
            case "CodeSystem":
                codeSystems.register(r, packageInfo);
                break;
            case "ImplementationGuide":
                guides.register(r, packageInfo);
                break;
            case "CapabilityStatement":
                capstmts.register(r, packageInfo);
                break;
            case "Measure":
                measures.register(r, packageInfo);
                break;
            case "Library":
                libraries.register(r, packageInfo);
                break;
            case "SearchParameter":
                searchParameters.register(r, packageInfo);
                break;
            case "PlanDefinition":
                plans.register(r, packageInfo);
                break;
            case "OperationDefinition":
                operations.register(r, packageInfo);
                break;
            case "Questionnaire":
                questionnaires.register(r, packageInfo);
                break;
            case "ConceptMap":
                maps.register(r, packageInfo);
                break;
            case "StructureMap":
                transforms.register(r, packageInfo);
                break;
            case "NamingSystem":
                systems.register(r, packageInfo);
                break;
        }
    }
}

Example 5 with PackageVersion

use of org.hl7.fhir.r5.context.IWorkerContext.PackageVersion in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method cacheResourceFromPackage.

public void cacheResourceFromPackage(Resource r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        if (r.getId() != null) {
            Map<String, ResourceProxy> map = allResourcesById.get(r.fhirType());
            if (map == null) {
                map = new HashMap<String, ResourceProxy>();
                allResourcesById.put(r.fhirType(), map);
            }
            if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
                map.put(r.getId(), new ResourceProxy(r));
            } else {
                logger.logDebugMessage(LogCategory.PROGRESS, "Ignore " + r.fhirType() + "/" + r.getId() + " from package " + packageInfo.toString());
            }
        }
        if (r instanceof CodeSystem || r instanceof NamingSystem) {
            oidCache.clear();
        }
        if (r instanceof CanonicalResource) {
            CanonicalResource m = (CanonicalResource) r;
            String url = m.getUrl();
            if (!allowLoadingDuplicates && hasResource(r.getClass(), url)) {
                // special workaround for known problems with existing packages
                if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                    return;
                }
                throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
            }
            if (r instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) m;
                if ("1.4.0".equals(version)) {
                    fixOldSD(sd);
                }
                structures.see(sd, packageInfo);
            } else if (r instanceof ValueSet) {
                valueSets.see((ValueSet) m, packageInfo);
            } else if (r instanceof CodeSystem) {
                CodeSystemUtilities.crossLinkCodeSystem((CodeSystem) r);
                codeSystems.see((CodeSystem) m, packageInfo);
            } else if (r instanceof ImplementationGuide) {
                guides.see((ImplementationGuide) m, packageInfo);
            } else if (r instanceof CapabilityStatement) {
                capstmts.see((CapabilityStatement) m, packageInfo);
            } else if (r instanceof Measure) {
                measures.see((Measure) m, packageInfo);
            } else if (r instanceof Library) {
                libraries.see((Library) m, packageInfo);
            } else if (r instanceof SearchParameter) {
                searchParameters.see((SearchParameter) m, packageInfo);
            } else if (r instanceof PlanDefinition) {
                plans.see((PlanDefinition) m, packageInfo);
            } else if (r instanceof OperationDefinition) {
                operations.see((OperationDefinition) m, packageInfo);
            } else if (r instanceof Questionnaire) {
                questionnaires.see((Questionnaire) m, packageInfo);
            } else if (r instanceof ConceptMap) {
                maps.see((ConceptMap) m, packageInfo);
            } else if (r instanceof StructureMap) {
                transforms.see((StructureMap) m, packageInfo);
            } else if (r instanceof NamingSystem) {
                systems.see((NamingSystem) m, packageInfo);
            }
        }
    }
}