Examples with Annotation org.hl7.fhir.r5.model.Annotation used on opensource projects

Example 36 with Annotation

use of org.hl7.fhir.r5.model.Annotation in project org.hl7.fhir.core by hapifhir.

the class ListRenderer method render.

public boolean render(XhtmlNode x, ListResource list) throws FHIRFormatError, DefinitionException, IOException {
    if (list.hasTitle()) {
        x.h2().tx(list.getTitle());
    }
    XhtmlNode t = x.table("clstu");
    XhtmlNode tr = t.tr();
    if (list.hasDate()) {
        tr.td().tx("Date: " + list.getDate().toLocaleString());
    }
    if (list.hasMode()) {
        tr.td().tx("Mode: " + list.getMode().getDisplay());
    }
    if (list.hasStatus()) {
        tr.td().tx("Status: " + list.getStatus().getDisplay());
    }
    if (list.hasCode()) {
        tr.td().tx("Code: " + display(list.getCode()));
    }
    tr = t.tr();
    if (list.hasSubject()) {
        shortForRef(tr.td().txN("Subject: "), list.getSubject());
    }
    if (list.hasEncounter()) {
        shortForRef(tr.td().txN("Encounter: "), list.getEncounter());
    }
    if (list.hasSource()) {
        shortForRef(tr.td().txN("Source: "), list.getEncounter());
    }
    if (list.hasOrderedBy()) {
        tr.td().tx("Order: " + display(list.getOrderedBy()));
    }
    for (Annotation a : list.getNote()) {
        renderAnnotation(x, a);
    }
    boolean flag = false;
    boolean deleted = false;
    boolean date = false;
    for (ListResourceEntryComponent e : list.getEntry()) {
        flag = flag || e.hasFlag();
        deleted = deleted || e.hasDeleted();
        date = date || e.hasDate();
    }
    t = x.table("grid");
    tr = t.tr().style("backgound-color: #eeeeee");
    tr.td().b().tx("Items");
    if (date) {
        tr.td().tx("Date");
    }
    if (flag) {
        tr.td().tx("Flag");
    }
    if (deleted) {
        tr.td().tx("Deleted");
    }
    for (ListResourceEntryComponent e : list.getEntry()) {
        tr = t.tr();
        shortForRef(tr.td(), e.getItem());
        if (date) {
            tr.td().tx(e.hasDate() ? e.getDate().toLocaleString() : "");
        }
        if (flag) {
            tr.td().tx(e.hasFlag() ? display(e.getFlag()) : "");
        }
        if (deleted) {
            tr.td().tx(e.hasDeleted() ? Boolean.toString(e.getDeleted()) : "");
        }
    }
    return false;
}

Example 37 with Annotation

use of org.hl7.fhir.r5.model.Annotation in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu3.model.DateType)
        x.addText(((org.hl7.fhir.dstu3.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu3.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu3.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu3.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu3.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.tx("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.tx(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.ah(tr.getReference());
                else
                    c = x.ah(r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null && tr.getResource() != null) {
                c.tx(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null && tr.getResource() != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
        if (sd == null)
            throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
        else
            generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails);
    }
}

Example 38 with Annotation

use of org.hl7.fhir.r5.model.Annotation in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method processDataType.

private void processDataType(StructureDefinition profile, QuestionnaireItemComponent group, ElementDefinition element, String path, TypeRefComponent t, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> answerGroups, List<ElementDefinition> parents) throws FHIRException {
    String tc = t.getWorkingCode();
    if (tc.equals("code"))
        addCodeQuestions(group, element, path, answerGroups);
    else if (Utilities.existsInList(tc, "string", "id", "oid", "uuid", "markdown"))
        addStringQuestions(group, element, path, answerGroups);
    else if (Utilities.existsInList(tc, "uri", "url", "canonical"))
        addUriQuestions(group, element, path, answerGroups);
    else if (tc.equals("boolean"))
        addBooleanQuestions(group, element, path, answerGroups);
    else if (tc.equals("decimal"))
        addDecimalQuestions(group, element, path, answerGroups);
    else if (tc.equals("dateTime") || tc.equals("date"))
        addDateTimeQuestions(group, element, path, answerGroups);
    else if (tc.equals("instant"))
        addInstantQuestions(group, element, path, answerGroups);
    else if (tc.equals("time"))
        addTimeQuestions(group, element, path, answerGroups);
    else if (tc.equals("CodeableConcept"))
        addCodeableConceptQuestions(group, element, path, answerGroups);
    else if (tc.equals("Period"))
        addPeriodQuestions(group, element, path, answerGroups);
    else if (tc.equals("Ratio"))
        addRatioQuestions(group, element, path, answerGroups);
    else if (tc.equals("HumanName"))
        addHumanNameQuestions(group, element, path, answerGroups);
    else if (tc.equals("Address"))
        addAddressQuestions(group, element, path, answerGroups);
    else if (tc.equals("ContactPoint"))
        addContactPointQuestions(group, element, path, answerGroups);
    else if (tc.equals("Identifier"))
        addIdentifierQuestions(group, element, path, answerGroups);
    else if (tc.equals("integer") || tc.equals("positiveInt") || tc.equals("unsignedInt"))
        addIntegerQuestions(group, element, path, answerGroups);
    else if (tc.equals("Coding"))
        addCodingQuestions(group, element, path, answerGroups);
    else if (Utilities.existsInList(tc, "Quantity", "Count", "Age", "Duration", "Distance", "Money"))
        addQuantityQuestions(group, element, path, answerGroups);
    else if (tc.equals("Money"))
        addMoneyQuestions(group, element, path, answerGroups);
    else if (tc.equals("Reference"))
        addReferenceQuestions(group, element, path, t.getTargetProfile(), answerGroups);
    else if (tc.equals("Duration"))
        addDurationQuestions(group, element, path, answerGroups);
    else if (tc.equals("base64Binary"))
        addBinaryQuestions(group, element, path, answerGroups);
    else if (tc.equals("Attachment"))
        addAttachmentQuestions(group, element, path, answerGroups);
    else if (tc.equals("Age"))
        addAgeQuestions(group, element, path, answerGroups);
    else if (tc.equals("Range"))
        addRangeQuestions(group, element, path, answerGroups);
    else if (tc.equals("Timing"))
        addTimingQuestions(group, element, path, answerGroups);
    else if (tc.equals("Annotation"))
        addAnnotationQuestions(group, element, path, answerGroups);
    else if (tc.equals("SampledData"))
        addSampledDataQuestions(group, element, path, answerGroups);
    else if (tc.equals("Extension")) {
        if (t.hasProfile())
            addExtensionQuestions(profile, group, element, path, t.getProfile().get(0).getValue(), answerGroups, parents);
    } else if (tc.equals("SampledData"))
        addSampledDataQuestions(group, element, path, answerGroups);
    else if (!tc.equals("Narrative") && !tc.equals("Resource") && !tc.equals("Meta") && !tc.equals("Signature")) {
        StructureDefinition sd = context.fetchTypeDefinition(tc);
        if (sd == null)
            throw new NotImplementedException("Unhandled Data Type: " + tc + " on element " + element.getPath());
        buildGroup(group, sd, sd.getSnapshot().getElementFirstRep(), parents, answerGroups);
    }
}

Example 39 with Annotation

use of org.hl7.fhir.r5.model.Annotation in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode parent, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent) throws FHIRException, UnsupportedEncodingException, IOException, EOperationOutcome {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        renderDateTime(x, e);
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r5.model.DateType) {
        org.hl7.fhir.r5.model.DateType dt = ((org.hl7.fhir.r5.model.DateType) e);
        renderDate(x, dt);
    } else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType) {
        x.addText(((BooleanType) e).getValue().toString());
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept(x, (CodeableConcept) e, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding(x, (Coding) e, showCodeDetails);
    } else if (e instanceof CodeableReference) {
        renderCodeableReference(x, (CodeableReference) e, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation(x, (Annotation) e);
    } else if (e instanceof Identifier) {
        renderIdentifier(x, (Identifier) e);
    } else if (e instanceof org.hl7.fhir.r5.model.IntegerType) {
        if (((org.hl7.fhir.r5.model.IntegerType) e).hasValue()) {
            x.addText(Integer.toString(((org.hl7.fhir.r5.model.IntegerType) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.Integer64Type) {
        if (((org.hl7.fhir.r5.model.Integer64Type) e).hasValue()) {
            x.addText(Long.toString(((org.hl7.fhir.r5.model.Integer64Type) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.DecimalType) {
        x.addText(((org.hl7.fhir.r5.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName(x, (HumanName) e);
    } else if (e instanceof SampledData) {
        renderSampledData(x, (SampledData) e);
    } else if (e instanceof Address) {
        renderAddress(x, (Address) e);
    } else if (e instanceof ContactPoint) {
        renderContactPoint(x, (ContactPoint) e);
    } else if (e instanceof Expression) {
        renderExpression(x, (Expression) e);
    } else if (e instanceof Money) {
        renderMoney(x, (Money) e);
    } else if (e instanceof ContactDetail) {
        ContactDetail cd = (ContactDetail) e;
        if (cd.hasName()) {
            x.tx(cd.getName() + ": ");
        }
        boolean first = true;
        for (ContactPoint c : cd.getTelecom()) {
            if (first)
                first = false;
            else
                x.tx(",");
            renderContactPoint(x, c);
        }
    } else if (e instanceof UriType) {
        renderUri(x, (UriType) e, defn.getPath(), rcontext != null && rcontext.getResourceResource() != null ? rcontext.getResourceResource().getId() : null);
    } else if (e instanceof Timing) {
        renderTiming(x, (Timing) e);
    } else if (e instanceof Range) {
        renderRange(x, (Range) e);
    } else if (e instanceof Quantity) {
        renderQuantity(x, (Quantity) e, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(x, ((Ratio) e).getNumerator(), showCodeDetails);
        x.tx("/");
        renderQuantity(x, ((Ratio) e).getDenominator(), showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        renderPeriod(x, p);
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.getReference() != null && r.getReference().contains("#")) {
            if (containedIds.contains(r.getReference().substring(1))) {
                x.ah(r.getReference()).tx("See " + r.getReference());
            } else {
                // in this case, we render the resource in line
                ResourceWrapper rw = null;
                for (ResourceWrapper t : res.getContained()) {
                    if (r.getReference().substring(1).equals(t.getId())) {
                        rw = t;
                    }
                }
                if (rw == null) {
                    renderReference(res, x, r);
                } else {
                    x.an(rw.getId());
                    ResourceRenderer rr = RendererFactory.factory(rw, context.copy().setAddGeneratedNarrativeHeader(false));
                    rr.render(parent.blockquote(), rw);
                }
            }
        } else {
            renderReference(res, x, r);
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof DataRequirement) {
        DataRequirement p = (DataRequirement) e;
        renderDataRequirement(x, p);
    } else if (e instanceof PrimitiveType) {
        x.tx(((PrimitiveType) e).primitiveValue());
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled - should not be here");
    }
}

Example 40 with Annotation

use of org.hl7.fhir.r5.model.Annotation in project fhir-bridge by ehrbase.

the class VorliegendeDiagnoseEvaluationConverter method mapKommentar.

private void mapKommentar(Condition condition, VorliegendeDiagnoseEvaluation vorliegendeDiagnose) {
    if (condition.hasNote()) {
        StringBuilder kommentar = new StringBuilder();
        for (Annotation annotation : condition.getNote()) {
            kommentar.append(annotation.getText());
        }
        vorliegendeDiagnose.setKommentarValue(kommentar.toString());
        isEmpty = false;
    }
}