Examples with Attachment org.hl7.fhir.r5.model.Attachment used on opensource projects

Example 56 with Attachment

use of org.hl7.fhir.r5.model.Attachment in project synthea by synthetichealth.

the class FhirStu3 method media.

/**
 * Map the given Media element to a FHIR Media resource, and add it to the given Bundle.
 *
 * @param rand Source of randomness to use when generating ids etc
 * @param personEntry    The Entry for the Person
 * @param bundle         Bundle to add the Media to
 * @param encounterEntry Current Encounter entry
 * @param obs   The Observation to map to FHIR and add to the bundle
 * @return The added Entry
 */
private static BundleEntryComponent media(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Observation obs) {
    org.hl7.fhir.dstu3.model.Media mediaResource = new org.hl7.fhir.dstu3.model.Media();
    if (obs.codes != null && obs.codes.size() > 0) {
        List<CodeableConcept> reasonList = obs.codes.stream().map(code -> mapCodeToCodeableConcept(code, SNOMED_URI)).collect(Collectors.toList());
        mediaResource.setReasonCode(reasonList);
    }
    // Hard code as an image
    mediaResource.setType(DigitalMediaType.PHOTO);
    mediaResource.setSubject(new Reference(personEntry.getFullUrl()));
    Attachment content = (Attachment) obs.value;
    org.hl7.fhir.dstu3.model.Attachment contentResource = new org.hl7.fhir.dstu3.model.Attachment();
    contentResource.setContentType(content.contentType);
    contentResource.setLanguage(content.language);
    if (content.data != null) {
        contentResource.setDataElement(new org.hl7.fhir.dstu3.model.Base64BinaryType(content.data));
    }
    contentResource.setUrl(content.url);
    contentResource.setSize(content.size);
    contentResource.setTitle(content.title);
    if (content.hash != null) {
        contentResource.setHashElement(new org.hl7.fhir.dstu3.model.Base64BinaryType(content.hash));
    }
    mediaResource.setWidth(content.width);
    mediaResource.setHeight(content.height);
    mediaResource.setContent(contentResource);
    return newEntry(rand, bundle, mediaResource);
}

Example 57 with Attachment

use of org.hl7.fhir.r5.model.Attachment in project synthea by synthetichealth.

the class FhirStu3 method convertToFHIR.

/**
 * Convert the given Person into a FHIR Bundle, containing the Patient and the
 * associated entries from their health record.
 *
 * @param person Person to generate the FHIR from
 * @param stopTime Time the simulation ended
 * @return FHIR Bundle containing the Person's health record.
 */
public static Bundle convertToFHIR(Person person, long stopTime) {
    Bundle bundle = new Bundle();
    if (TRANSACTION_BUNDLE) {
        bundle.setType(BundleType.TRANSACTION);
    } else {
        bundle.setType(BundleType.COLLECTION);
    }
    BundleEntryComponent personEntry = basicInfo(person, bundle, stopTime);
    for (Encounter encounter : person.record.encounters) {
        BundleEntryComponent encounterEntry = encounter(person, personEntry, bundle, encounter);
        for (HealthRecord.Entry condition : encounter.conditions) {
            condition(person, personEntry, bundle, encounterEntry, condition);
        }
        for (HealthRecord.Entry allergy : encounter.allergies) {
            allergy(person, personEntry, bundle, encounterEntry, allergy);
        }
        for (Observation observation : encounter.observations) {
            // Observation resources in stu3 don't support Attachments
            if (observation.value instanceof Attachment) {
                media(person, personEntry, bundle, encounterEntry, observation);
            } else {
                observation(person, personEntry, bundle, encounterEntry, observation);
            }
        }
        for (Procedure procedure : encounter.procedures) {
            procedure(person, personEntry, bundle, encounterEntry, procedure);
        }
        for (Medication medication : encounter.medications) {
            medication(person, personEntry, bundle, encounterEntry, medication);
        }
        for (HealthRecord.Entry immunization : encounter.immunizations) {
            immunization(person, personEntry, bundle, encounterEntry, immunization);
        }
        for (Report report : encounter.reports) {
            report(person, personEntry, bundle, encounterEntry, report);
        }
        for (CarePlan careplan : encounter.careplans) {
            careplan(person, personEntry, bundle, encounterEntry, careplan);
        }
        for (ImagingStudy imagingStudy : encounter.imagingStudies) {
            imagingStudy(person, personEntry, bundle, encounterEntry, imagingStudy);
        }
        for (HealthRecord.Device device : encounter.devices) {
            device(person, personEntry, bundle, device);
        }
        for (HealthRecord.Supply supply : encounter.supplies) {
            supplyDelivery(person, personEntry, bundle, supply, encounter);
        }
        // one claim per encounter
        BundleEntryComponent encounterClaim = encounterClaim(person, personEntry, bundle, encounterEntry, encounter.claim);
        explanationOfBenefit(personEntry, bundle, encounterEntry, person, encounterClaim, encounter);
    }
    return bundle;
}

Example 58 with Attachment

use of org.hl7.fhir.r5.model.Attachment in project synthea by synthetichealth.

the class ExportHelper method getObservationValue.

/**
 * Helper to get a readable string representation of an Observation's value.
 * Units are not included.
 *
 * @param observation The observation to get the value from
 * @return A human-readable string representation of observation.value
 */
public static String getObservationValue(Observation observation) {
    String value = null;
    if (observation.value instanceof Condition) {
        Code conditionCode = ((HealthRecord.Entry) observation.value).codes.get(0);
        value = conditionCode.display;
    } else if (observation.value instanceof Code) {
        value = ((Code) observation.value).display;
    } else if (observation.value instanceof String) {
        value = (String) observation.value;
    } else if (observation.value instanceof Double) {
        // round to 1 decimal place for display
        value = String.format(Locale.US, "%.1f", observation.value);
    } else if (observation.value instanceof SampledData) {
        value = sampledDataToValueString((SampledData) observation.value);
    } else if (observation.value instanceof Attachment) {
        value = attachmentToValueString((Attachment) observation.value);
    } else if (observation.value != null) {
        value = observation.value.toString();
    }
    return value;
}

Example 59 with Attachment

use of org.hl7.fhir.r5.model.Attachment in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveDiagnosticReport.

private DiagnosticReport resolveDiagnosticReport(ActivityDefinition activityDefinition, String patientId) {
    DiagnosticReport diagnosticReport = new DiagnosticReport();
    diagnosticReport.setStatus(DiagnosticReport.DiagnosticReportStatus.UNKNOWN);
    diagnosticReport.setSubject(new Reference(patientId));
    if (activityDefinition.hasCode()) {
        diagnosticReport.setCode(activityDefinition.getCode());
    } else {
        throw new ActivityDefinitionApplyException("Missing required ActivityDefinition.code property for DiagnosticReport");
    }
    if (activityDefinition.hasRelatedArtifact()) {
        List<Attachment> presentedFormAttachments = new ArrayList<>();
        for (RelatedArtifact artifact : activityDefinition.getRelatedArtifact()) {
            Attachment attachment = new Attachment();
            if (artifact.hasUrl()) {
                attachment.setUrl(artifact.getUrl());
            }
            if (artifact.hasDisplay()) {
                attachment.setTitle(artifact.getDisplay());
            }
            presentedFormAttachments.add(attachment);
        }
        diagnosticReport.setPresentedForm(presentedFormAttachments);
    }
    return diagnosticReport;
}

Example 60 with Attachment

use of org.hl7.fhir.r5.model.Attachment in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveCommunicationRequest.

private CommunicationRequest resolveCommunicationRequest(ActivityDefinition activityDefinition, String patientId) {
    CommunicationRequest communicationRequest = new CommunicationRequest();
    communicationRequest.setStatus(CommunicationRequest.CommunicationRequestStatus.UNKNOWN);
    communicationRequest.setSubject(new Reference(patientId));
    // Unsure if this is correct - this is the way Motive is doing it...
    if (activityDefinition.hasCode()) {
        if (activityDefinition.getCode().hasText()) {
            communicationRequest.addPayload().setContent(new StringType(activityDefinition.getCode().getText()));
        }
    }
    if (activityDefinition.hasRelatedArtifact()) {
        for (RelatedArtifact artifact : activityDefinition.getRelatedArtifact()) {
            if (artifact.hasUrl()) {
                Attachment attachment = new Attachment().setUrl(artifact.getUrl());
                if (artifact.hasDisplay()) {
                    attachment.setTitle(artifact.getDisplay());
                }
                CommunicationRequest.CommunicationRequestPayloadComponent payload = new CommunicationRequest.CommunicationRequestPayloadComponent();
                payload.setContent(artifact.hasDisplay() ? attachment.setTitle(artifact.getDisplay()) : attachment);
                communicationRequest.setPayload(Collections.singletonList(payload));
            }
        // TODO - other relatedArtifact types
        }
    }
    return communicationRequest;
}