Examples with CapabilityStatement org.hl7.fhir.r5.model.CapabilityStatement used on opensource projects

Example 91 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___named_parameters_on_measure_report.

@Test
public void measure_report_generated___named_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    mockFhirResourceRetrieval(measure);
    Map<String, Parameter> parameterMap = new HashMap<>();
    parameterMap.put("integerParam", new IntegerParameter(1));
    parameterMap.put("decimalParam", new DecimalParameter("1.0"));
    parameterMap.put("stringParam", new StringParameter("1"));
    parameterMap.put("booleanParam", new BooleanParameter(false));
    parameterMap.put("datetimeParam", new DatetimeParameter("2020-01-01"));
    parameterMap.put("dateParam", new DateParameter("2020-01-01"));
    parameterMap.put("timeParam", new TimeParameter("01:00:00"));
    parameterMap.put("quantityParam", new QuantityParameter("1.0", "ml"));
    parameterMap.put("ratioParam", new RatioParameter(new QuantityParameter("1.0", "ml"), new QuantityParameter("2.0", "ml")));
    parameterMap.put("codeParam", new CodeParameter("1", "2", "3", "4"));
    parameterMap.put("conceptParam", new ConceptParameter("1", new CodeParameter("1", "2", "3", "4")));
    parameterMap.put("datetimeIntervalParam", new IntervalParameter(new DatetimeParameter("2020-01-01"), true, new DatetimeParameter("2021-01-01"), true));
    parameterMap.put("quantityIntervalParam", new IntervalParameter(new QuantityParameter("1.0", "ml"), true, new QuantityParameter("2.0", "ml"), true));
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameterMap);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(parameterMap.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(parameterMap.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}

Example 92 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___java_overrides_overwrite_measure_params.

@Test
public void measure_report_generated___java_overrides_overwrite_measure_params() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    String duplicateParamName = "duplicateParam";
    int fhirMeasureIntValue = 10;
    int javaParameterIntValue = 99;
    measure.addExtension(createParameterExtension(duplicateParamName, new IntegerType(fhirMeasureIntValue)));
    mockFhirResourceRetrieval(measure);
    Map<String, Parameter> parameterMap = new HashMap<>();
    parameterMap.put(duplicateParamName, new IntegerParameter(javaParameterIntValue));
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameterMap);
    assertNotNull(report);
    // Make sure report only contained one entry for the duplicate parameter
    List<Type> filteredReportParams = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).filter(x -> x.getName().equals(duplicateParamName)).map(x -> x.getExtensionByUrl(PARAMETER_VALUE_URL).getValue()).collect(Collectors.toList());
    assertEquals(1, filteredReportParams.size());
    // Sanity check input parameter values were different before checking for correct value
    assertNotEquals(fhirMeasureIntValue, javaParameterIntValue);
    assertEquals(javaParameterIntValue, ((IntegerType) filteredReportParams.get(0)).getValue().intValue());
}

Example 93 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_patient_list_report_generated.

@Test
public void measure_patient_list_report_generated() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient1 = getPatient("1", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient1);
    Patient patient2 = getPatient("2", AdministrativeGender.FEMALE, "1970-10-10");
    mockFhirResourceRetrieval(patient2);
    List<String> patientIds = new ArrayList<>();
    patientIds.add(patient1.getId());
    patientIds.add(patient2.getId());
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql", "text/cql", "cql/fhir-measure/test-dummy-populations.xml", "application/elm+xml");
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    MeasureReport report = evaluator.evaluatePatientListMeasure(patientIds, measure, null, null);
    assertNotNull(report);
    List<ListResource.ListEntryComponent> patientList = ((ListResource) report.getContained().get(0)).getEntry();
    List<String> actualPatientIds = patientList.stream().map(a -> StringUtils.removeStart(a.getItem().getReference(), "Patient/")).collect(Collectors.toList());
    assertThat(actualPatientIds, Matchers.containsInAnyOrder(patient1.getId(), patient2.getId()));
}

Example 94 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class R4FhirServerResourceResolverBaseTest method mockMetdataRequest.

private void mockMetdataRequest() {
    CapabilityStatement metadata = new CapabilityStatement();
    metadata.setFhirVersion(Enumerations.FHIRVersion._4_0_1);
    mockRequest(WireMock::get, "/metadata", 200, parser.encodeResourceToString(metadata));
}

Example 95 with CapabilityStatement

use of org.hl7.fhir.r5.model.CapabilityStatement in project quality-measure-and-cohort-service by Alvearie.

the class ValueSetUtilTest method getCapabilityStatement.

private CapabilityStatement getCapabilityStatement() {
    CapabilityStatement metadata = new CapabilityStatement();
    metadata.setFhirVersion(Enumerations.FHIRVersion._4_0_1);
    return metadata;
}