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Example 6 with Enumeration

use of org.hl7.fhir.r5.model.Enumeration in project openmrs-module-fhir2 by openmrs.

the class AllergyIntoleranceFhirResourceProviderIntegrationTest method shouldUpdateExistingAllergyAsXML.

@Test
public void shouldUpdateExistingAllergyAsXML() throws Exception {
    // get the existing record
    MockHttpServletResponse response = get("/AllergyIntolerance/" + ALLERGY_UUID).accept(FhirMediaTypes.XML).go();
    AllergyIntolerance allergy = readResponse(response);
    // update the existing record
    Enumeration<AllergyIntolerance.AllergyIntoleranceCategory> category = new Enumeration<>(new AllergyIntolerance.AllergyIntoleranceCategoryEnumFactory());
    category.setValue(AllergyIntolerance.AllergyIntoleranceCategory.ENVIRONMENT);
    allergy.getCategory().set(0, category);
    // send the update to the server
    response = put("/AllergyIntolerance/" + ALLERGY_UUID).xmlContent(toXML(allergy)).accept(FhirMediaTypes.XML).go();
    assertThat(response, isOk());
    assertThat(response.getContentType(), is(FhirMediaTypes.XML.toString()));
    assertThat(response.getContentAsString(), notNullValue());
    // read the updated record
    AllergyIntolerance updatedAllergy = readResponse(response);
    assertThat(updatedAllergy, notNullValue());
    assertThat(updatedAllergy.getIdElement().getIdPart(), equalTo(ALLERGY_UUID));
    assertThat(updatedAllergy.getCategory().get(0).getValue().toCode(), equalTo("environment"));
    assertThat(updatedAllergy, validResource());
    // double-check the record returned via get
    response = get("/AllergyIntolerance/" + ALLERGY_UUID).accept(FhirMediaTypes.XML).go();
    AllergyIntolerance reReadAllergy = readResponse(response);
    assertThat(reReadAllergy.getCategory().get(0).getValue().toCode(), equalTo("environment"));
}
Also used : AllergyIntolerance(org.hl7.fhir.dstu3.model.AllergyIntolerance) Enumeration(org.hl7.fhir.dstu3.model.Enumeration) MockHttpServletResponse(org.springframework.mock.web.MockHttpServletResponse) Test(org.junit.Test)

Example 7 with Enumeration

use of org.hl7.fhir.r5.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class ImplementationGuide30_40 method convertImplementationGuide.

public static org.hl7.fhir.dstu3.model.ImplementationGuide convertImplementationGuide(org.hl7.fhir.r4.model.ImplementationGuide src) throws FHIRException {
    if (src == null)
        return null;
    org.hl7.fhir.dstu3.model.ImplementationGuide tgt = new org.hl7.fhir.dstu3.model.ImplementationGuide();
    ConversionContext30_40.INSTANCE.getVersionConvertor_30_40().copyDomainResource(src, tgt);
    if (src.hasUrl())
        tgt.setUrlElement(Uri30_40.convertUri(src.getUrlElement()));
    if (src.hasVersion())
        tgt.setVersionElement(String30_40.convertString(src.getVersionElement()));
    if (src.hasName())
        tgt.setNameElement(String30_40.convertString(src.getNameElement()));
    if (src.hasStatus())
        tgt.setStatusElement(Enumerations30_40.convertPublicationStatus(src.getStatusElement()));
    if (src.hasExperimental())
        tgt.setExperimentalElement(Boolean30_40.convertBoolean(src.getExperimentalElement()));
    if (src.hasDateElement())
        tgt.setDateElement(DateTime30_40.convertDateTime(src.getDateElement()));
    if (src.hasPublisher())
        tgt.setPublisherElement(String30_40.convertString(src.getPublisherElement()));
    for (org.hl7.fhir.r4.model.ContactDetail t : src.getContact()) tgt.addContact(ContactDetail30_40.convertContactDetail(t));
    if (src.hasDescription())
        tgt.setDescriptionElement(MarkDown30_40.convertMarkdown(src.getDescriptionElement()));
    for (org.hl7.fhir.r4.model.UsageContext t : src.getUseContext()) tgt.addUseContext(Timing30_40.convertUsageContext(t));
    for (org.hl7.fhir.r4.model.CodeableConcept t : src.getJurisdiction()) tgt.addJurisdiction(CodeableConcept30_40.convertCodeableConcept(t));
    if (src.hasCopyright())
        tgt.setCopyrightElement(MarkDown30_40.convertMarkdown(src.getCopyrightElement()));
    if (src.hasFhirVersion())
        for (Enumeration<org.hl7.fhir.r4.model.Enumerations.FHIRVersion> v : src.getFhirVersion()) {
            tgt.setFhirVersion(v.asStringValue());
            break;
        }
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideDependsOnComponent t : src.getDependsOn()) tgt.addDependency(convertImplementationGuideDependencyComponent(t));
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideDefinitionGroupingComponent t : src.getDefinition().getGrouping()) tgt.addPackage(convertImplementationGuidePackageComponent(t));
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideDefinitionResourceComponent t : src.getDefinition().getResource()) {
        findPackage(tgt.getPackage(), t.getGroupingId()).addResource(convertImplementationGuidePackageResourceComponent(t));
    }
    for (org.hl7.fhir.r4.model.ImplementationGuide.ImplementationGuideGlobalComponent t : src.getGlobal()) tgt.addGlobal(convertImplementationGuideGlobalComponent(t));
    if (src.getDefinition().hasPage())
        tgt.setPage(convertImplementationGuidePageComponent(src.getDefinition().getPage()));
    return tgt;
}
Also used : Enumeration(org.hl7.fhir.r4.model.Enumeration) ImplementationGuide(org.hl7.fhir.dstu3.model.ImplementationGuide) ImplementationGuide(org.hl7.fhir.dstu3.model.ImplementationGuide)

Example 8 with Enumeration

use of org.hl7.fhir.r5.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class ISO21090Importer method generateValueSet.

private void generateValueSet(EnumValueSet evs) throws Exception {
    ValueSet bvs = ctxt.fetchResource(ValueSet.class, evs.getTemplate());
    if (bvs == null)
        throw new Exception("Did not find template value set " + evs.getTemplate());
    ValueSet vs = bvs.copy();
    vs.getCompose().getInclude().clear();
    vs.getIdentifier().clear();
    vs.setName("ISO 20190 " + evs.getName() + " Enumeration");
    vs.setId(evs.getName());
    vs.setUrl("http://hl7.org/fhir/iso21090/ValueSet/" + vs.getId());
    vs.setDate(new Date());
    vs.setExperimental(false);
    ConceptSetComponent inc = vs.getCompose().addInclude().setSystem(evs.getSystem());
    for (String code : evs.getCodes()) {
        inc.addConcept().setCode(code);
    }
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "iso21090\\ValueSet-" + evs.getName() + ".xml")), vs);
}
Also used : ConceptSetComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent) XmlParser(org.hl7.fhir.dstu3.formats.XmlParser) FileOutputStream(java.io.FileOutputStream) ValueSet(org.hl7.fhir.dstu3.model.ValueSet) IOException(java.io.IOException) ParserConfigurationException(javax.xml.parsers.ParserConfigurationException) SAXException(org.xml.sax.SAXException)

Example 9 with Enumeration

use of org.hl7.fhir.r5.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        x.addText("Extensions: Todo");
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu2.model.DateType)
        x.addText(((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.addTag("a").attribute("href", tr.getReference());
                else
                    c = x.addTag("a").attribute("href", r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null) {
                c.addText(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.addText("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
}
Also used : Meta(org.hl7.fhir.dstu2.model.Meta) Base64(org.apache.commons.codec.binary.Base64) Address(org.hl7.fhir.dstu2.model.Address) StringType(org.hl7.fhir.dstu2.model.StringType) NotImplementedException(org.apache.commons.lang3.NotImplementedException) Attachment(org.hl7.fhir.dstu2.model.Attachment) UriType(org.hl7.fhir.dstu2.model.UriType) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode) HumanName(org.hl7.fhir.dstu2.model.HumanName) ContactPoint(org.hl7.fhir.dstu2.model.ContactPoint) Identifier(org.hl7.fhir.dstu2.model.Identifier) Coding(org.hl7.fhir.dstu2.model.Coding) Narrative(org.hl7.fhir.dstu2.model.Narrative) SampledData(org.hl7.fhir.dstu2.model.SampledData) Ratio(org.hl7.fhir.dstu2.model.Ratio) ElementDefinition(org.hl7.fhir.dstu2.model.ElementDefinition) InstantType(org.hl7.fhir.dstu2.model.InstantType) Enumeration(org.hl7.fhir.dstu2.model.Enumeration) Reference(org.hl7.fhir.dstu2.model.Reference) BooleanType(org.hl7.fhir.dstu2.model.BooleanType) Resource(org.hl7.fhir.dstu2.model.Resource) DomainResource(org.hl7.fhir.dstu2.model.DomainResource) Quantity(org.hl7.fhir.dstu2.model.Quantity) Period(org.hl7.fhir.dstu2.model.Period) Range(org.hl7.fhir.dstu2.model.Range) Base(org.hl7.fhir.dstu2.model.Base) Annotation(org.hl7.fhir.dstu2.model.Annotation) IdType(org.hl7.fhir.dstu2.model.IdType) Extension(org.hl7.fhir.dstu2.model.Extension) DateTimeType(org.hl7.fhir.dstu2.model.DateTimeType) CodeType(org.hl7.fhir.dstu2.model.CodeType) EventTiming(org.hl7.fhir.dstu2.model.Timing.EventTiming) Timing(org.hl7.fhir.dstu2.model.Timing) Base64BinaryType(org.hl7.fhir.dstu2.model.Base64BinaryType) CodeableConcept(org.hl7.fhir.dstu2.model.CodeableConcept)

Example 10 with Enumeration

use of org.hl7.fhir.r5.model.Enumeration in project org.hl7.fhir.core by hapifhir.

the class ValueSet method setProperty.

@Override
public void setProperty(String name, Base value) throws FHIRException {
    if (name.equals("url"))
        // UriType
        this.url = castToUri(value);
    else if (name.equals("identifier"))
        // Identifier
        this.identifier = castToIdentifier(value);
    else if (name.equals("version"))
        // StringType
        this.version = castToString(value);
    else if (name.equals("name"))
        // StringType
        this.name = castToString(value);
    else if (name.equals("status"))
        // Enumeration<ConformanceResourceStatus>
        this.status = new ConformanceResourceStatusEnumFactory().fromType(value);
    else if (name.equals("experimental"))
        // BooleanType
        this.experimental = castToBoolean(value);
    else if (name.equals("publisher"))
        // StringType
        this.publisher = castToString(value);
    else if (name.equals("contact"))
        this.getContact().add((ValueSetContactComponent) value);
    else if (name.equals("date"))
        // DateTimeType
        this.date = castToDateTime(value);
    else if (name.equals("lockedDate"))
        // DateType
        this.lockedDate = castToDate(value);
    else if (name.equals("description"))
        // StringType
        this.description = castToString(value);
    else if (name.equals("useContext"))
        this.getUseContext().add(castToCodeableConcept(value));
    else if (name.equals("immutable"))
        // BooleanType
        this.immutable = castToBoolean(value);
    else if (name.equals("requirements"))
        // StringType
        this.requirements = castToString(value);
    else if (name.equals("copyright"))
        // StringType
        this.copyright = castToString(value);
    else if (name.equals("extensible"))
        // BooleanType
        this.extensible = castToBoolean(value);
    else if (name.equals("compose"))
        // ValueSetComposeComponent
        this.compose = (ValueSetComposeComponent) value;
    else if (name.equals("expansion"))
        // ValueSetExpansionComponent
        this.expansion = (ValueSetExpansionComponent) value;
    else
        super.setProperty(name, value);
}
Also used : ConformanceResourceStatusEnumFactory(org.hl7.fhir.dstu2016may.model.Enumerations.ConformanceResourceStatusEnumFactory)

Aggregations

CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)14 ArrayList (java.util.ArrayList)11 NotImplementedException (org.apache.commons.lang3.NotImplementedException)11 ElementDefinition (org.hl7.fhir.r5.model.ElementDefinition)10 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)10 FHIRException (org.hl7.fhir.exceptions.FHIRException)7 StringType (org.hl7.fhir.r5.model.StringType)7 ConformanceResourceStatusEnumFactory (org.hl7.fhir.dstu2016may.model.Enumerations.ConformanceResourceStatusEnumFactory)6 Enumeration (org.hl7.fhir.dstu3.model.Enumeration)6 Enumeration (org.hl7.fhir.r4.model.Enumeration)6 StringType (org.hl7.fhir.r4b.model.StringType)6 Enumeration (org.hl7.fhir.r5.model.Enumeration)6 UriType (org.hl7.fhir.r5.model.UriType)6 Base64 (org.apache.commons.codec.binary.Base64)5 PublicationStatusEnumFactory (org.hl7.fhir.dstu3.model.Enumerations.PublicationStatusEnumFactory)5 StringType (org.hl7.fhir.dstu3.model.StringType)5 Enumeration (org.hl7.fhir.dstu2.model.Enumeration)4 Reference (org.hl7.fhir.dstu2.model.Reference)4 StringType (org.hl7.fhir.dstu2.model.StringType)4 Patient (org.hl7.fhir.r4.model.Patient)4