Examples with ParameterDefinition org.hl7.fhir.r5.model.ParameterDefinition used on opensource projects

Example 31 with ParameterDefinition

use of org.hl7.fhir.r5.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class FHIRRestUtils method complicatedTypeValueConstructor.

static String complicatedTypeValueConstructor(ParameterDefinition parameterDefinition) {
    FhirContext context = FhirContext.forCached(FhirVersionEnum.R4);
    IParser parser = context.newJsonParser();
    String valueKey;
    // In order to use the hapi parser, we cannot translate an extension by itself. The patient object wraps the extension
    Patient patient = new Patient();
    Extension extension = new Extension();
    switch(parameterDefinition.getType()) {
        case "Period":
            Period period = (Period) parameterDefinition.getExtension().get(0).getValue();
            extension.setValue(period);
            patient.addExtension(extension);
            valueKey = "valuePeriod";
            break;
        case "Range":
            Range range = (Range) parameterDefinition.getExtension().get(0).getValue();
            extension.setValue(range);
            patient.addExtension(extension);
            valueKey = "valueRange";
            break;
        case "Quantity":
            Quantity quantity = (Quantity) parameterDefinition.getExtension().get(0).getValue();
            extension.setValue(quantity);
            patient.addExtension(extension);
            valueKey = "valueQuantity";
            break;
        default:
            throw new RuntimeException("Complicated Type" + parameterDefinition.getType() + " not yet implemented");
    }
    String intermediateValue = parser.encodeResourceToString(patient);
    ObjectMapper mapper = new ObjectMapper();
    try {
        JsonNode root = mapper.readTree(intermediateValue);
        JsonNode nameNode = root.path("extension");
        return nameNode.get(0).path(valueKey).toString();
    } catch (JsonProcessingException e) {
        throw new RuntimeException("There was an issue with json translation", e);
    }
}

Example 32 with ParameterDefinition

use of org.hl7.fhir.r5.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___datetime_parameters_on_report_in_utc.

@Test
public void measure_report_generated___datetime_parameters_on_report_in_utc() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    String fhirDefaultDatetimeParamterName = "fhirDatetimeParamDefault";
    String fhirTimezoneDatetimeParameterName = "fhirDatetimeParamGMTPlus4";
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    measure.addExtension(createParameterExtension(fhirDefaultDatetimeParamterName, new DateTimeType("2020-04-04")));
    measure.addExtension(createParameterExtension(fhirTimezoneDatetimeParameterName, new DateTimeType("2020-04-04T00:00:00.0+04:00")));
    mockFhirResourceRetrieval(measure);
    String javaDefaultDatetimeParamterName = "javaDatetimeParamDefault";
    String javaTimezoneDatetimeParameterName = "javaDatetimeParamGMTPlus4";
    Map<String, Parameter> parameterMap = new HashMap<>();
    parameterMap.put(javaDefaultDatetimeParamterName, new DatetimeParameter("2020-01-01"));
    parameterMap.put(javaTimezoneDatetimeParameterName, new DatetimeParameter("2020-01-01T00:00:00.0+04:00"));
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameterMap);
    assertNotNull(report);
    Map<String, DateTimeType> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).filter(x -> x.getExtensionByUrl(PARAMETER_VALUE_URL).getValue() instanceof DateTimeType).collect(Collectors.toMap(ParameterDefinition::getName, x -> (DateTimeType) x.getExtensionByUrl(PARAMETER_VALUE_URL).getValue()));
    DateTimeType javaDefaultResult = parameterNames.get(javaDefaultDatetimeParamterName);
    DateTimeType javaTimezoneResult = parameterNames.get(javaTimezoneDatetimeParameterName);
    assertTrue(new DateTimeType("2020-01-01T00:00:00.000Z").equalsUsingFhirPathRules(javaDefaultResult));
    assertEquals(TimeZone.getTimeZone("UTC"), javaDefaultResult.getTimeZone());
    assertTrue(new DateTimeType("2019-12-31T20:00:00.000Z").equalsUsingFhirPathRules(javaTimezoneResult));
    assertEquals(TimeZone.getTimeZone("UTC"), javaTimezoneResult.getTimeZone());
    DateTimeType fhirDefaultResult = parameterNames.get(fhirDefaultDatetimeParamterName);
    DateTimeType fhirTimezoneResult = parameterNames.get(fhirTimezoneDatetimeParameterName);
    assertTrue(new DateTimeType("2020-04-04T00:00:00.000Z").equalsUsingFhirPathRules(fhirDefaultResult));
    assertEquals(TimeZone.getTimeZone("UTC"), fhirDefaultResult.getTimeZone());
    assertTrue(new DateTimeType("2020-04-03T20:00:00.000Z").equalsUsingFhirPathRules(fhirTimezoneResult));
    assertEquals(TimeZone.getTimeZone("UTC"), fhirTimezoneResult.getTimeZone());
}

Example 33 with ParameterDefinition

use of org.hl7.fhir.r5.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___named_parameters_on_measure_report.

@Test
public void measure_report_generated___named_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    mockFhirResourceRetrieval(measure);
    Map<String, Parameter> parameterMap = new HashMap<>();
    parameterMap.put("integerParam", new IntegerParameter(1));
    parameterMap.put("decimalParam", new DecimalParameter("1.0"));
    parameterMap.put("stringParam", new StringParameter("1"));
    parameterMap.put("booleanParam", new BooleanParameter(false));
    parameterMap.put("datetimeParam", new DatetimeParameter("2020-01-01"));
    parameterMap.put("dateParam", new DateParameter("2020-01-01"));
    parameterMap.put("timeParam", new TimeParameter("01:00:00"));
    parameterMap.put("quantityParam", new QuantityParameter("1.0", "ml"));
    parameterMap.put("ratioParam", new RatioParameter(new QuantityParameter("1.0", "ml"), new QuantityParameter("2.0", "ml")));
    parameterMap.put("codeParam", new CodeParameter("1", "2", "3", "4"));
    parameterMap.put("conceptParam", new ConceptParameter("1", new CodeParameter("1", "2", "3", "4")));
    parameterMap.put("datetimeIntervalParam", new IntervalParameter(new DatetimeParameter("2020-01-01"), true, new DatetimeParameter("2021-01-01"), true));
    parameterMap.put("quantityIntervalParam", new IntervalParameter(new QuantityParameter("1.0", "ml"), true, new QuantityParameter("2.0", "ml"), true));
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameterMap);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(parameterMap.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(parameterMap.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}

Example 34 with ParameterDefinition

use of org.hl7.fhir.r5.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method createParameterExtension.

private Extension createParameterExtension(String name, Type innerValue) {
    ParameterDefinition parameterDefinition = new ParameterDefinition().setName(name).setUse(ParameterDefinition.ParameterUse.IN).setType(innerValue.fhirType());
    parameterDefinition.addExtension(new Extension().setUrl(PARAMETER_DEFAULT_URL).setValue(innerValue));
    return new Extension().setUrl(MEASURE_PARAMETER_URL).setValue(parameterDefinition);
}

Example 35 with ParameterDefinition

use of org.hl7.fhir.r5.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___java_overrides_overwrite_measure_params.

@Test
public void measure_report_generated___java_overrides_overwrite_measure_params() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    String duplicateParamName = "duplicateParam";
    int fhirMeasureIntValue = 10;
    int javaParameterIntValue = 99;
    measure.addExtension(createParameterExtension(duplicateParamName, new IntegerType(fhirMeasureIntValue)));
    mockFhirResourceRetrieval(measure);
    Map<String, Parameter> parameterMap = new HashMap<>();
    parameterMap.put(duplicateParamName, new IntegerParameter(javaParameterIntValue));
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameterMap);
    assertNotNull(report);
    // Make sure report only contained one entry for the duplicate parameter
    List<Type> filteredReportParams = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).filter(x -> x.getName().equals(duplicateParamName)).map(x -> x.getExtensionByUrl(PARAMETER_VALUE_URL).getValue()).collect(Collectors.toList());
    assertEquals(1, filteredReportParams.size());
    // Sanity check input parameter values were different before checking for correct value
    assertNotEquals(fhirMeasureIntValue, javaParameterIntValue);
    assertEquals(javaParameterIntValue, ((IntegerType) filteredReportParams.get(0)).getValue().intValue());
}