Examples with PartData org.jbei.ice.lib.dto.entry.PartData used on opensource projects

Example 6 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class VisibleEntries method getEntries.

public List<PartData> getEntries(ColumnField field, boolean asc, int start, int limit, String filter) {
    List<Entry> results;
    if (isAdmin) {
        // no filters
        results = dao.retrieveAllEntries(field, asc, start, limit, filter);
    } else {
        // retrieve groups for account and filter by permission
        Set<Group> accountGroups = new HashSet<>(account.getGroups());
        accountGroups.add(everybodyGroup);
        results = dao.retrieveVisibleEntries(account, accountGroups, field, asc, start, limit, filter);
    }
    ArrayList<PartData> data = new ArrayList<>();
    for (Entry entry : results) {
        PartData info = ModelToInfoFactory.createTableViewData(account.getEmail(), entry, false);
        data.add(info);
    }
    return data;
}

Example 7 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class OwnerEntries method retrieveOwnerEntries.

public List<PartData> retrieveOwnerEntries(ColumnField sort, boolean asc, int start, int limit, String filter) {
    List<Entry> entries;
    if (this.isAdmin || this.isSelf) {
        entries = entryDAO.retrieveOwnerEntries(this.ownerAccount.getEmail(), sort, asc, start, limit, filter);
    } else {
        Set<Group> accountGroups = new HashSet<>(account.getGroups());
        GroupController controller = new GroupController();
        Group everybodyGroup = controller.createOrRetrievePublicGroup();
        accountGroups.add(everybodyGroup);
        // retrieve entries for user that can be read by others
        entries = entryDAO.retrieveUserEntries(account, this.ownerAccount.getEmail(), accountGroups, sort, asc, start, limit, filter);
    }
    ArrayList<PartData> data = new ArrayList<>();
    for (Entry entry : entries) {
        PartData info = ModelToInfoFactory.createTableViewData(account.getEmail(), entry, false);
        data.add(info);
    }
    return data;
}

Example 8 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class SharedEntries method getEntries.

public List<PartData> getEntries(ColumnField field, boolean asc, int start, int limit, String filter) {
    GroupController groupController = new GroupController();
    Group publicGroup = groupController.createOrRetrievePublicGroup();
    Set<Group> accountGroups = account.getGroups();
    accountGroups.remove(publicGroup);
    List<Entry> entries = this.entryDAO.sharedWithUserEntries(account, accountGroups, field, asc, start, limit, filter);
    ArrayList<PartData> data = new ArrayList<>();
    for (Entry entry : entries) {
        PartData info = ModelToInfoFactory.createTableViewData(account.getEmail(), entry, false);
        data.add(info);
    }
    return data;
}

Example 9 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class CollectionEntries method getSharedEntries.

/**
     * Retrieves entries shared with user.
     *
     * @param field  sort field
     * @param asc    sort order ascending if true, descending if false
     * @param offset paging parameter start
     * @param limit  maximum number of entries to retrieve
     * @param filter optional text to filter entries by
     * @return wrapper around list of parts matching the parameters along with the maximum number of entries
     * available
     */
protected Results<PartData> getSharedEntries(ColumnField field, boolean asc, int offset, int limit, String filter) {
    SharedEntries sharedEntries = new SharedEntries(this.userId);
    List<PartData> entries = sharedEntries.getEntries(field, asc, offset, limit, filter);
    final long count = sharedEntries.getNumberOfEntries(filter);
    Results<PartData> results = new Results<>();
    results.setResultCount(count);
    results.setData(entries);
    return results;
}

Example 10 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class CollectionEntries method getEntriesByVisibility.

/**
     * Retrieves entries by the specified visibility. {@link Visibility} is used to create
     * collections of entries
     *
     * @param visibility visibility to retrieve entries by
     * @param field      sort field
     * @param asc        sort order
     * @param offset     paging start
     * @param limit      maximum number of entries to retrieve
     * @param user       additional user filter
     * @param filter     optional text to filter entries by
     * @return wrapper around list of parts that conform to the parameters and the maximum number
     * of such entries that are available
     */
protected Results<PartData> getEntriesByVisibility(Visibility visibility, ColumnField field, boolean asc, int offset, int limit, String user, String filter) {
    List<Entry> entries = entryDAO.getByVisibility(user, visibility, field, asc, offset, limit, filter);
    Results<PartData> results = new Results<>();
    for (Entry entry : entries) {
        PartData info = ModelToInfoFactory.createTableViewData(userId, entry, false);
        results.getData().add(info);
    }
    results.setResultCount(entryDAO.getByVisibilityCount(user, visibility, filter));
    return results;
}