Examples with PartData org.jbei.ice.lib.dto.entry.PartData used on opensource projects

Example 26 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class WebResource method getWebEntry.

@GET
@Produces(MediaType.APPLICATION_JSON)
@Path("/{id}/entries/{entryId}")
public Response getWebEntry(@PathParam("id") final long partnerId, @PathParam("entryId") final long entryId) {
    final String userId = super.getUserId();
    final PartData result = remoteEntries.getPublicEntry(userId, partnerId, entryId);
    return super.respond(Response.Status.OK, result);
}

Example 27 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class BulkUploadControllerTest method testGetBulkImport.

@Test
public void testGetBulkImport() throws Exception {
    Account account = AccountCreator.createTestAccount("testGetBulkImport", false);
    BulkEntryCreator creator = new BulkEntryCreator();
    // create bulk upload
    long id = creator.createBulkUpload(account.getEmail(), EntryType.PART);
    Assert.assertTrue(id > 0);
    int count = 100;
    for (int i = 0; i < count; i += 1) {
        PartData partData = new PartData(EntryType.PLASMID);
        partData.setBioSafetyLevel(1);
        partData.setShortDescription("part description");
        partData.setName("part" + i);
        partData = creator.createEntry(account.getEmail(), id, partData);
        Assert.assertNotNull(partData);
    // add to bulk upload
    }
    BulkUploadInfo info = controller.getBulkImport(account.getEmail(), id, 0, 100);
    Assert.assertNotNull(info);
    Assert.assertEquals(info.getEntryList().size(), 100);
    // test retrieval in order
    for (int i = 0; i < 100; i += 10) {
        info = controller.getBulkImport(account.getEmail(), id, i, 10);
        Assert.assertNotNull(info);
        Assert.assertEquals(info.getEntryList().size(), 10);
        ArrayList<PartData> list = info.getEntryList();
        int j = i;
        for (PartData data : list) {
            Assert.assertEquals(data.getName(), "part" + j);
            j += 1;
        }
    }
}

Example 28 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class BulkEntryCreatorTest method testCreateEntry.

@Test
public void testCreateEntry() throws Exception {
    Account account = AccountCreator.createTestAccount("testCreateEntry", false);
    long uploadId = creator.createBulkUpload(account.getEmail(), EntryType.PLASMID);
    PartData partData = new PartData(EntryType.PLASMID);
    partData.setShortDescription("test summary");
    partData.setName("plasmid");
    partData.setBioSafetyLevel(1);
    partData = creator.createEntry(account.getEmail(), uploadId, partData);
    Assert.assertNotNull(partData);
}

Example 29 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class TransferredPartsTest method testReceiveTransferredEntry.

@Test
public void testReceiveTransferredEntry() throws Exception {
    Account account = AccountCreator.createTestAccount("testReceivedTransferredEntry", false);
    Strain strain = createStrainObject(account);
    Plasmid plasmid = createPlasmidObject(account);
    // link the two
    PartData strainData = strain.toDataTransferObject();
    PartData plasmidData = plasmid.toDataTransferObject();
    strainData.getLinkedParts().add(plasmidData);
    strainData = parts.receiveTransferredEntry(strainData);
    Assert.assertNotNull(strainData);
    strain = (Strain) DAOFactory.getEntryDAO().get(strainData.getId());
    Assert.assertNotNull(strain);
    Assert.assertTrue(strain.getVisibility() == Visibility.TRANSFERRED.getValue());
    plasmid = (Plasmid) DAOFactory.getEntryDAO().get(strainData.getLinkedParts().get(0).getId());
    Assert.assertNotNull(plasmid);
    Assert.assertTrue(plasmid.getVisibility() == Visibility.TRANSFERRED.getValue());
    Assert.assertTrue(strain.getLinkedEntries().contains(plasmid));
    // create new plasmid
    Plasmid plasmid2 = createPlasmidObject(account);
    strainData.getLinkedParts().add(plasmid2.toDataTransferObject());
    Assert.assertEquals(2, strainData.getLinkedParts().size());
    // transfer strain (with 2 linked plasmids)
    PartData received = parts.receiveTransferredEntry(strainData);
    Assert.assertNotNull(received);
    // check return
    strain = (Strain) DAOFactory.getEntryDAO().get(strainData.getId());
    Assert.assertNotNull(strain);
    plasmid = (Plasmid) DAOFactory.getEntryDAO().get(strainData.getLinkedParts().get(0).getId());
    Assert.assertNotNull(plasmid);
    Assert.assertTrue(strain.getLinkedEntries().contains(plasmid));
    plasmid2 = (Plasmid) DAOFactory.getEntryDAO().get(strainData.getLinkedParts().get(1).getId());
    Assert.assertNotNull(plasmid2);
    Assert.assertTrue(strain.getLinkedEntries().contains(plasmid2));
}

Example 30 with PartData

use of org.jbei.ice.lib.dto.entry.PartData in project ice by JBEI.

the class EntryDAOTest method testGetByUniqueName.

@Test
public void testGetByUniqueName() throws Exception {
    Account account = AccountCreator.createTestAccount("testGetByUniqueName", false);
    PartData data = new PartData(EntryType.PART);
    data.setShortDescription("summary for test");
    String uniqueName = "pTest" + account.getEmail();
    data.setName(uniqueName);
    data.setBioSafetyLevel(1);
    EntryCreator creator = new EntryCreator();
    creator.createPart(account.getEmail(), data);
    List<Entry> entries = entryDAO.getByName("pTest");
    Assert.assertTrue(entries == null || entries.isEmpty());
    entries = entryDAO.getByName(uniqueName);
    Assert.assertNotNull(entries);
}