Examples with Attachment org.obiba.mica.file.Attachment used on opensource projects

Example 11 with Attachment

use of org.obiba.mica.file.Attachment in project mica2 by obiba.

the class AttachmentDtos method fromDto.

@NotNull
Attachment fromDto(@NotNull Mica.AttachmentDtoOrBuilder dto) {
    Attachment attachment = new Attachment();
    attachment.setId(dto.getId());
    attachment.setName(dto.getFileName());
    if (dto.hasType())
        attachment.setType(dto.getType());
    if (dto.getDescriptionCount() > 0)
        attachment.setDescription(localizedStringDtos.fromDto(dto.getDescriptionList()));
    if (dto.hasLang())
        attachment.setLang(new Locale(dto.getLang()));
    attachment.setSize(dto.getSize());
    if (dto.hasMd5())
        attachment.setMd5(dto.getMd5());
    attachment.setJustUploaded(dto.getJustUploaded());
    if (dto.hasTimestamps())
        TimestampsDtos.fromDto(dto.getTimestamps(), attachment);
    if (dto.getAttributesCount() > 0) {
        dto.getAttributesList().forEach(attributeDto -> attachment.addAttribute(attributeDtos.fromDto(attributeDto)));
    }
    if (dto.hasPath())
        attachment.setPath(dto.getPath());
    return attachment;
}

Example 12 with Attachment

use of org.obiba.mica.file.Attachment in project mica2 by obiba.

the class DataAccessRequestService method save.

public DataAccessRequest save(@NotNull DataAccessRequest request) {
    DataAccessRequest saved = request;
    DataAccessRequest.Status from = null;
    Iterable<Attachment> attachmentsToDelete = null;
    Iterable<Attachment> attachmentsToSave = null;
    if (request.isNew()) {
        setAndLogStatus(saved, DataAccessRequest.Status.OPENED);
        saved.setId(generateId());
        attachmentsToSave = saved.getAttachments();
    } else {
        saved = dataAccessRequestRepository.findOne(request.getId());
        if (saved != null) {
            attachmentsToDelete = Sets.difference(Sets.newHashSet(saved.getAttachments()), Sets.newHashSet(request.getAttachments()));
            attachmentsToSave = Sets.difference(Sets.newHashSet(request.getAttachments()), Sets.newHashSet(saved.getAttachments()));
            from = saved.getStatus();
            // validate the status
            dataAccessRequestUtilService.checkStatusTransition(saved, request.getStatus());
            saved.setStatus(request.getStatus());
            if (request.hasStatusChangeHistory())
                saved.setStatusChangeHistory(request.getStatusChangeHistory());
            // merge beans
            BeanUtils.copyProperties(request, saved, "id", "version", "createdBy", "createdDate", "lastModifiedBy", "lastModifiedDate", "statusChangeHistory");
        } else {
            saved = request;
            setAndLogStatus(saved, DataAccessRequest.Status.OPENED);
        }
    }
    schemaFormContentFileService.save(saved, dataAccessRequestRepository.findOne(request.getId()), String.format("/data-access-request/%s", saved.getId()));
    if (attachmentsToSave != null)
        attachmentsToSave.forEach(a -> {
            fileStoreService.save(a.getId());
            a.setJustUploaded(false);
            attachmentRepository.save(a);
        });
    saved.setLastModifiedDate(DateTime.now());
    dataAccessRequestRepository.saveWithReferences(saved);
    if (attachmentsToDelete != null)
        attachmentsToDelete.forEach(a -> fileStoreService.delete(a.getId()));
    eventBus.post(new DataAccessRequestUpdatedEvent(saved));
    sendNotificationEmails(saved, from);
    return saved;
}

Example 13 with Attachment

use of org.obiba.mica.file.Attachment in project mica2 by obiba.

the class DataAccessRequestResource method getAttachment.

@GET
@Timed
@Path("/attachments/{attachmentId}/_download")
public Response getAttachment(@PathParam("id") String id, @PathParam("attachmentId") String attachmentId) throws IOException {
    subjectAclService.checkPermission("/data-access-request", "VIEW", id);
    DataAccessRequest request = dataAccessRequestService.findById(id);
    Optional<Attachment> r = request.getAttachments().stream().filter(a -> a.getId().equals(attachmentId)).findFirst();
    if (!r.isPresent())
        throw NoSuchEntityException.withId(Attachment.class, attachmentId);
    return Response.ok(fileStoreService.getFile(r.get().getFileReference())).header("Content-Disposition", "attachment; filename=\"" + r.get().getName() + "\"").build();
}

Example 14 with Attachment

use of org.obiba.mica.file.Attachment in project mica2 by obiba.

the class AbstractPublishedStudyResource method getStudyFileResource.

protected FileResource getStudyFileResource(String id, String fileId) {
    checkAccess(id);
    FileResource fileResource = applicationContext.getBean(FileResource.class);
    BaseStudy study = getStudy(id);
    if (study.hasLogo() && study.getLogo().getId().equals(fileId)) {
        fileResource.setAttachment(study.getLogo());
    } else {
        List<Attachment> attachments = fileSystemService.findAttachments(String.format("^/%s/%s", getStudyPath(id), id), true).stream().filter(a -> a.getId().equals(fileId)).collect(Collectors.toList());
        if (attachments.isEmpty())
            throw NoSuchEntityException.withId(Attachment.class, fileId);
        fileResource.setAttachment(attachments.get(0));
    }
    return fileResource;
}

Example 15 with Attachment

use of org.obiba.mica.file.Attachment in project mica2 by obiba.

the class DraftIndividualStudyResource method file.

@Path("/file/{fileId}")
public FileResource file(@PathParam("fileId") String fileId, @QueryParam("key") String key) {
    checkPermission("/draft/individual-study", "VIEW", key);
    FileResource fileResource = applicationContext.getBean(FileResource.class);
    Study study = individualStudyService.findDraft(id);
    if (study.hasLogo() && study.getLogo().getId().equals(fileId)) {
        fileResource.setAttachment(study.getLogo());
    } else {
        List<Attachment> attachments = fileSystemService.findAttachments(String.format("^/individual-study/%s", study.getId()), false).stream().filter(a -> a.getId().equals(fileId)).collect(Collectors.toList());
        if (attachments.isEmpty())
            throw NoSuchEntityException.withId(Attachment.class, fileId);
        fileResource.setAttachment(attachments.get(0));
    }
    return fileResource;
}