Examples with Study org.obiba.mica.study.domain.Study used on opensource projects

Example 11 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class TestDataCollectionEventSort method test_study_population_sort.

@Test
public void test_study_population_sort() {
    Study study = new Study();
    study.setId("01234567889");
    study.addPopulation(createPopulation("Population001", createEvent("A", 2010, 1, 2020, 12), createEvent("A", 2014, 1, 2035, 12)));
    study.addPopulation(createPopulation("Population001", createEvent("A", 1997, 8, 1998, 12), createEvent("A", 1996, 1, 2000, 12)));
    Population population = Iterables.get(study.getPopulations(), 0);
    DataCollectionEvent event = Iterables.get(population.getDataCollectionEvents(), 0);
    assertThat(event.getStart()).isEqualTo(of(1996, 1));
}

Example 12 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class TestDataCollectionEventSort method test_study_population_sort_with_duplicate_events.

@Test
public void test_study_population_sort_with_duplicate_events() {
    Study study = new Study();
    study.setId("01234567889");
    study.addPopulation(createPopulation("Population001", createEvent("A", "A", 2010, 1, 2020, 12), createEvent("A", "A", 2014, 1, 2035, 12), createEvent("A", "A", 2010, 1, 2020, 12)));
    Population population = Iterables.get(study.getPopulations(), 0);
    SortedSet<DataCollectionEvent> events = population.getDataCollectionEvents();
    assertThat(events.size()).isEqualTo(2);
    assertThat(Iterables.get(events, 0).getStart()).isEqualTo(of(2010, 1));
    assertThat(Iterables.get(events, 1).getStart()).isEqualTo(of(2014, 1));
}

Example 13 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class StudyDtosTest method createStudy.

private Study createStudy() {
    Study study = new Study();
    study.setId("study_1");
    study.setLogo(createAttachment());
    return study;
}

Example 14 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class DraftIndividualStudyResource method update.

@PUT
@Timed
public Response update(@SuppressWarnings("TypeMayBeWeakened") Mica.StudyDto studyDto, @Nullable @QueryParam("comment") String comment, @QueryParam("weightChanged") boolean weightChanged) {
    checkPermission("/draft/individual-study", "EDIT");
    // ensure study exists
    individualStudyService.findDraft(id);
    Study study = (Study) dtos.fromDto(studyDto);
    HashMap<Object, Object> response = Maps.newHashMap();
    response.put("study", study);
    response.put("potentialConflicts", individualStudyService.getPotentialConflicts(study, false));
    individualStudyService.save(study, comment, weightChanged);
    return Response.ok(response, MediaType.APPLICATION_JSON_TYPE).build();
}

Example 15 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class StudySeedService method importStudies.

/**
 * Import Studies from a jackson file.
 *
 * @param json
 * @throws java.io.IOException
 */
private void importStudies(File json) throws IOException {
    log.info("Seeding studies with file: {}", json.getAbsolutePath());
    InputStream inputStream = new FileInputStream(json);
    List<Study> studies = objectMapper.readValue(inputStream, new TypeReference<List<Study>>() {
    });
    for (Study study : studies) {
        individualStudyService.save(study);
        individualStudyService.publish(study.getId(), true);
    }
}