Examples with Study org.obiba.mica.study.domain.Study used on opensource projects

Example 21 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class StudyDtos method fromDto.

@NotNull
BaseStudy fromDto(@NotNull Mica.StudyDtoOrBuilder dto) {
    Assert.isTrue(dto.hasExtension(Mica.CollectionStudyDto.type) || dto.hasExtension(Mica.HarmonizationStudyDto.type), "StudyDto must of a type extension.");
    BaseStudy study = dto.hasExtension(Mica.CollectionStudyDto.type) ? new Study() : new HarmonizationStudy();
    if (dto.hasId())
        study.setId(dto.getId());
    if (dto.getNameCount() > 0)
        study.setName(localizedStringDtos.fromDto(dto.getNameList()));
    if (dto.getAcronymCount() > 0)
        study.setAcronym(localizedStringDtos.fromDto(dto.getAcronymList()));
    if (dto.hasLogo())
        study.setLogo(attachmentDtos.fromDto(dto.getLogo()));
    if (dto.hasTimestamps())
        TimestampsDtos.fromDto(dto.getTimestamps(), study);
    if (dto.getObjectivesCount() > 0)
        study.setObjectives(localizedStringDtos.fromDto(dto.getObjectivesList()));
    if (dto.hasOpal())
        study.setOpal(dto.getOpal());
    if (dto.getMembershipsCount() > 0) {
        Map<String, List<Membership>> memberships = Maps.newHashMap();
        dto.getMembershipsList().forEach(e -> memberships.put(e.getRole(), e.getMembersList().stream().map(p -> new Membership(personDtos.fromDto(p), e.getRole())).collect(toList())));
        study.setMemberships(memberships);
    }
    if (dto.getPopulationsCount() > 0) {
        study.setPopulations(dto.getPopulationsList().stream().map(populationDtos::fromDto).collect(Collectors.toCollection(TreeSet<org.obiba.mica.study.domain.Population>::new)));
    }
    if (dto.hasContent() && !Strings.isNullOrEmpty(dto.getContent()))
        study.setModel(JSONUtils.toMap(dto.getContent()));
    else
        study.setModel(new HashMap<>());
    return study;
}

Example 22 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class CollectedDatasetServiceTest method buildStudy.

private Study buildStudy() {
    Study s = new Study();
    s.setOpal("opal");
    return s;
}

Example 23 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method test_publish_current.

@Test
public void test_publish_current() throws Exception {
    Study study = new Study();
    study.setName(en("name en").forFr("name fr"));
    individualStudyService.save(study);
    assertThat(individualStudyService.findAllStates()).hasSize(1);
    assertThat(individualStudyService.findPublishedStates()).isEmpty();
    individualStudyService.publish(study.getId(), true);
    List<StudyState> publishedStates = individualStudyService.findPublishedStates();
    assertThat(publishedStates).hasSize(1);
    StudyState publishedState = publishedStates.get(0);
    assertThat(publishedState.getId()).isEqualTo(study.getId());
    assertThat(publishedState.getPublishedTag()).isEqualTo("1");
    Study draft = individualStudyService.findDraft(study.getId());
    draft.setName(en("new name en").forFr("new name fr"));
    individualStudyService.save(draft);
    assertThat(individualStudyService.findDraft(study.getId())).areFieldsEqualToEachOther(draft);
}

Example 24 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method test_loosing_git_base_repo.

@Test
public void test_loosing_git_base_repo() throws IOException {
    Study study = new Study();
    Stream.of("a", "b", "c").forEach(name -> {
        study.setName(en(name + " en").forFr(name + " fr"));
        individualStudyService.save(study);
        individualStudyService.publish(study.getId(), true);
    });
    FileUtil.delete(Config.BASE_REPO);
    Study draft = individualStudyService.findDraft(study.getId());
    draft.setName(en("d en").forFr("d fr"));
    individualStudyService.save(draft);
    individualStudyService.publish(draft.getId(), true);
    StudyState studyState = individualStudyService.findStateById(draft.getId());
    assertThat(studyState.isPublished()).isTrue();
    assertThat(studyState.getPublishedTag()).isEqualTo("4");
}

Example 25 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method test_delete_study.

@Test
public void test_delete_study() {
    Study study = new Study();
    study.setName(en("name en").forFr("name fr"));
    individualStudyService.save(study);
    assertThat(studyStateRepository.findAll()).hasSize(1);
    individualStudyService.delete(study.getId());
    assertThat(studyRepository.findAll()).hasSize(0);
    assertThat(studyStateRepository.findAll()).hasSize(0);
}