Examples with Study org.obiba.mica.study.domain.Study used on opensource projects

Example 6 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method test_loosing_git_base_and_clone_repos.

@Test
public void test_loosing_git_base_and_clone_repos() throws IOException {
    Study study = new Study();
    Stream.of("a", "b", "c").forEach(name -> {
        study.setName(en(name + " en").forFr(name + " fr"));
        individualStudyService.save(study);
        individualStudyService.publish(study.getId(), true);
    });
    FileUtil.delete(Config.BASE_REPO);
    FileUtil.delete(Config.BASE_CLONE);
    Study draft = individualStudyService.findDraft(study.getId());
    draft.setName(en("d en").forFr("d fr"));
    individualStudyService.save(draft);
    individualStudyService.publish(draft.getId(), true);
    StudyState studyState = individualStudyService.findStateById(draft.getId());
    assertThat(studyState.isPublished()).isTrue();
    assertThat(studyState.getPublishedTag()).isEqualTo("1");
}

Example 7 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method test_delete_study_conflict.

@Test
public void test_delete_study_conflict() {
    Study study = new Study();
    study.setName(en("name en").forFr("name fr"));
    individualStudyService.save(study);
    Network network = new Network();
    network.setId("test");
    network.setStudyIds(new ArrayList() {

        {
            add(study.getId());
        }
    });
    networkRepository.save(network);
    assertThat(studyStateRepository.findAll()).hasSize(1);
    exception.expect(ConstraintException.class);
    individualStudyService.delete(study.getId());
}

Example 8 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method test_find_all_draft_studies.

@Test
public void test_find_all_draft_studies() {
    Stream.of("cancer", "gout", "diabetes").forEach(name -> {
        Study draft = new Study();
        draft.setName(en(name + " en").forFr(name + " fr"));
        individualStudyService.save(draft);
    });
    List<Study> drafts = individualStudyService.findAllDraftStudies();
    assertThat(drafts.size()).isEqualTo(3);
    assertThat(drafts.get(2).getName().get("en")).isEqualTo("diabetes en");
}

Example 9 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class IndividualStudyServiceTest method testCreateStudyWithContacts.

@Test
public void testCreateStudyWithContacts() throws Exception {
    Study study = new Study();
    study.setId("test");
    Person person = new Person();
    person.setEmail("test@test.com");
    List<Person> persons = Lists.newArrayList();
    persons.add(person);
    study.getMemberships().get(Membership.CONTACT).addAll(persons.stream().map(e -> new Membership(e, "contact")).collect(Collectors.toList()));
    individualStudyService.save(study);
    Study retrievedStudy = individualStudyService.findDraft(study.getId());
    List<Person> retrievedPersons = retrievedStudy.getMemberships().get(Membership.CONTACT).stream().map(Membership::getPerson).collect(Collectors.toList());
    assertThat(retrievedPersons).contains(person);
}

Example 10 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class TestDataCollectionEventSort method test_study_population_sort_with_duplicate_event_dates.

@Test
public void test_study_population_sort_with_duplicate_event_dates() {
    Study study = new Study();
    study.setId("01234567889");
    study.addPopulation(createPopulation("Population001", createEvent("A", 2010, 1, 2020, 12), createEvent("B", 2014, 1, 2035, 12), createEvent("C", 2010, 1, 2020, 12)));
    Population population = Iterables.get(study.getPopulations(), 0);
    SortedSet<DataCollectionEvent> events = population.getDataCollectionEvents();
    assertThat(events.size()).isEqualTo(3);
    assertThat(Iterables.get(events, 0).getStart()).isEqualTo(of(2010, 1));
    assertThat(Iterables.get(events, 1).getStart()).isEqualTo(of(2010, 1));
}