Examples with Study org.obiba.mica.study.domain.Study used on opensource projects

Example 31 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class PublishedStudyResource method getStudyDto.

@GET
@Timed
public Mica.StudyDto getStudyDto(@PathParam("id") String id, @QueryParam("locale") String locale) {
    checkAccess(id);
    BaseStudy study = getStudy(id, locale);
    return study instanceof Study ? dtos.asDto((Study) study) : dtos.asDto((HarmonizationStudy) study);
}

Example 32 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class Mica2Upgrade method migrateStudies.

private void migrateStudies() {
    List<Study> studiesWithoutModel = studyRepository.findWithoutModel();
    if (!studiesWithoutModel.isEmpty()) {
        logger.info("Migrating studies 1.x to 2.x: START");
        for (Study studyWithoutModel : studiesWithoutModel) {
            studyWithoutModel.getModel();
            studyRepository.save(studyWithoutModel);
        }
        logger.info("Migrating studies: END");
    }
}

Example 33 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class CollectedDatasetService method processVariablesForStudyDataset.

public List<DatasetVariable> processVariablesForStudyDataset(StudyDataset dataset, Iterable<DatasetVariable> variables) {
    if (!dataset.hasStudyTable()) {
        return Lists.newArrayList(variables);
    }
    StudyTable studyTable = dataset.getStudyTable();
    BaseStudy study = studyService.findStudy(dataset.getStudyTable().getStudyId());
    Population population = study.findPopulation(studyTable.getPopulationId());
    if (population == null) {
        return Lists.newArrayList(variables);
    }
    int populationWeight = population.getWeight();
    DataCollectionEvent dataCollectionEvent = population.findDataCollectionEvent(studyTable.getDataCollectionEventId());
    if (dataCollectionEvent == null) {
        return Lists.newArrayList(variables);
    }
    int dataCollectionEventWeight = dataCollectionEvent.getWeight();
    return StreamSupport.stream(variables.spliterator(), false).map(datasetVariable -> {
        datasetVariable.setPopulationWeight(populationWeight);
        datasetVariable.setDataCollectionEventWeight(dataCollectionEventWeight);
        return datasetVariable;
    }).collect(toList());
}