Examples with Study org.obiba.mica.study.domain.Study used on opensource projects

Example 41 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class StudyDtosTest method test_full_dto.

@Test
public void test_full_dto() throws Exception {
    when(attachmentDtos.asDto(any(Attachment.class))).thenReturn(Mica.AttachmentDto.newBuilder().setId("123").setFileName("logo123").build());
    when(attachmentDtos.fromDto(any(Mica.AttachmentDtoOrBuilder.class))).thenReturn(createAttachment());
    Study study = createStudy();
    Mica.StudyDto dto = studyDtos.asDto(study, true);
    Study fromDto = (Study) studyDtos.fromDto(dto);
    assertTimestamps(study, dto);
    assertThat(fromDto).isEqualTo(study);
}

Example 42 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class StudyDtosTest method test_required_only_dto.

@Test
public void test_required_only_dto() throws Exception {
    Study study = new Study();
    study.setId(new ObjectId().toString());
    study.setName(en("Canadian Longitudinal Study on Aging"));
    study.setObjectives(en("The Canadian Longitudinal Study on Aging (CLSA) is a large, national, long-term study"));
    Mica.StudyDto dto = studyDtos.asDto(study, true);
    Study fromDto = (Study) studyDtos.fromDto(dto);
    assertTimestamps(study, dto);
    assertThat(fromDto).areFieldsEqualToEachOther(study);
}

Example 43 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class CollectedDatasetServiceTest method buildStudy.

private Study buildStudy() {
    Study s = new Study();
    s.setOpal("opal");
    return s;
}

Example 44 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class StudyDtos method fromDto.

@NotNull
BaseStudy fromDto(@NotNull Mica.StudyDtoOrBuilder dto) {
    Assert.isTrue(dto.hasExtension(Mica.CollectionStudyDto.type) || dto.hasExtension(Mica.HarmonizationStudyDto.type), "StudyDto must of a type extension.");
    BaseStudy study = dto.hasExtension(Mica.CollectionStudyDto.type) ? new Study() : new HarmonizationStudy();
    if (dto.hasId())
        study.setId(dto.getId());
    if (dto.getNameCount() > 0)
        study.setName(localizedStringDtos.fromDto(dto.getNameList()));
    if (dto.getAcronymCount() > 0)
        study.setAcronym(localizedStringDtos.fromDto(dto.getAcronymList()));
    if (dto.hasLogo())
        study.setLogo(attachmentDtos.fromDto(dto.getLogo()));
    if (dto.hasTimestamps())
        TimestampsDtos.fromDto(dto.getTimestamps(), study);
    if (dto.getObjectivesCount() > 0)
        study.setObjectives(localizedStringDtos.fromDto(dto.getObjectivesList()));
    if (dto.hasOpal())
        study.setOpal(dto.getOpal());
    if (dto.getPopulationsCount() > 0) {
        study.setPopulations(dto.getPopulationsList().stream().map(populationDtos::fromDto).collect(Collectors.toCollection(TreeSet<org.obiba.mica.study.domain.Population>::new)));
    }
    if (dto.getMembershipSortOrderCount() > 0) {
        Map<String, List<String>> membershipSortOrder = new HashMap<>();
        dto.getMembershipSortOrderList().forEach(membership -> {
            membershipSortOrder.put(membership.getRole(), membership.getPersonIdsList());
        });
        study.setMembershipSortOrder(membershipSortOrder);
    }
    if (dto.hasContent() && !Strings.isNullOrEmpty(dto.getContent()))
        study.setModel(JSONUtils.toMap(dto.getContent()));
    else
        study.setModel(new HashMap<>());
    return study;
}

Example 45 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class VariableController method getStudy.

private BaseStudy getStudy(String id, boolean published) {
    BaseStudy study = published ? publishedStudyService.findById(id) : studyService.findStudy(id);
    if (study == null)
        throw NoSuchStudyException.withId(id);
    checkAccess((study instanceof Study) ? "/individual-study" : "/harmonization-study", id);
    return study;
}