Examples with Study org.obiba.mica.study.domain.Study used on opensource projects

Example 46 with Study

use of org.obiba.mica.study.domain.Study in project mica2 by obiba.

the class VariableController method addStudyTableParameters.

private void addStudyTableParameters(Map<String, Object> params, DatasetVariable variable) {
    try {
        String studyId = variable.getStudyId();
        boolean published = studyService.isPublished(studyId);
        BaseStudy study = getStudy(studyId, published);
        params.put("studyPublished", published);
        params.put("study", study);
        Population population = study.findPopulation(variable.getPopulationId().replace(variable.getStudyId() + ":", ""));
        params.put("population", population);
        DataCollectionEvent dce = population.findDataCollectionEvent(variable.getDceId().replace(variable.getPopulationId() + ":", ""));
        params.put("dce", dce);
        if (DatasetVariable.Type.Harmonized.equals(variable.getVariableType())) {
            HarmonizationDataset dataset = getHarmonizationDataset(variable.getDatasetId());
            if (DatasetVariable.OpalTableType.Study.equals(variable.getOpalTableType())) {
                Optional<StudyTable> studyTable = dataset.getStudyTables().stream().filter(st -> variable.getStudyId().equals(st.getStudyId()) && variable.getProject().equals(st.getProject()) && variable.getTable().equals(st.getTable())).findFirst();
                if (studyTable.isPresent())
                    params.put("opalTable", studyTable.get());
            } else {
                Optional<HarmonizationStudyTable> harmoStudyTable = dataset.getHarmonizationTables().stream().filter(st -> variable.getStudyId().equals(st.getStudyId()) && variable.getProject().equals(st.getProject()) && variable.getTable().equals(st.getTable())).findFirst();
                if (harmoStudyTable.isPresent())
                    params.put("opalTable", harmoStudyTable.get());
            }
        }
    } catch (Exception e) {
        // ignore
        log.warn("Failed at retrieving collected dataset's study/population/dce", e);
    }
}