Examples with HL7Exception ca.uhn.hl7v2.HL7Exception used on opensource projects

Example 41 with HL7Exception

use of ca.uhn.hl7v2.HL7Exception in project openmrs-core by openmrs.

the class HL7ServiceTest method resolveLocationId_shouldReturnInternalIdentifierOfLocationIfOnlyLocationNameIsSpecified.

/**
 * @throws HL7Exception
 * @see HL7Service#resolveLocationId(ca.uhn.hl7v2.model.v25.datatype.PL)
 */
@Test
public void resolveLocationId_shouldReturnInternalIdentifierOfLocationIfOnlyLocationNameIsSpecified() throws HL7Exception {
    executeDataSet("org/openmrs/hl7/include/ORUTest-initialData.xml");
    HL7Service hl7service = Context.getHL7Service();
    Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||1000^^^L^PN||||\r" + "PV1||O|99999^0^0^0&Test Location&0||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
    ORU_R01 oru = (ORU_R01) message;
    PV1 pv1 = oru.getPATIENT_RESULT().getPATIENT().getVISIT().getPV1();
    Assert.assertNotNull("PV1 parsed as null", pv1);
    PL hl7Location = pv1.getAssignedPatientLocation();
    Integer locationId = hl7service.resolveLocationId(hl7Location);
    Assert.assertEquals("Resolved and given locationId shoud be equals", Integer.valueOf(1), locationId);
}

Example 42 with HL7Exception

use of ca.uhn.hl7v2.HL7Exception in project streamsx.health by IBMStreams.

the class HapiMessageHandler method processMessage.

@Override
public Message processMessage(Message theMessage, Map<String, Object> arg1) throws ReceivingApplicationException, HL7Exception {
    server.messageArrived(theMessage);
    Message ack;
    try {
        // Always use the default parser to generate an ack
        // HAPI seems to get into trouble if the ADT_AXX superstructure
        // is used.  
        // Internally, when it tries to generate an ack message
        // the super structure setting in the model class factory causes the ADT_AXX message
        // to get created instead of the ACK getting created.  This is to override the model
        // class factory so that the proper class can be generated.
        theMessage.setParser(ackParser);
        ack = theMessage.generateACK();
        return ack;
    } catch (IOException e) {
        TRACE.log(TraceLevel.ERROR, "Unable to generate ack message", e);
    }
    return theMessage;
}

Example 43 with HL7Exception

use of ca.uhn.hl7v2.HL7Exception in project streamsx.health by IBMStreams.

the class ObxToSplMapper method parseOBX.

private void parseOBX(ArrayList<Observation> observations, String obxTs, String obxLocation, OBX obx, String sendingApp, String sendingFacility) throws HL7Exception {
    Observation observation = new Observation();
    observation.setTs(obxTs);
    observation.setLocation(obxLocation);
    String observationId = obx.getObservationIdentifier().getIdentifier().getValue();
    String unit = obx.getUnits().getIdentifier().getValue();
    observation.setObservationId(observationId);
    observation.setUnit(unit);
    observation.setSendingApp(sendingApp);
    observation.setSendingFacility(sendingFacility);
    Varies[] values = obx.getObservationValue();
    for (Varies value : values) {
        observation.setObservationValue(value.encode());
        observations.add(observation);
    }
}

Example 44 with HL7Exception

use of ca.uhn.hl7v2.HL7Exception in project tdi-studio-se by Talend.

the class HL7MessageTreeContentProvider method getChildren.

public Object[] getChildren(Object parentElement) {
    List values = new ArrayList();
    if (parentElement instanceof Message) {
        Message messParent = (Message) parentElement;
        String[] childNames = messParent.getNames();
        if (!values.isEmpty()) {
            values.clear();
        }
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = messParent.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Message) {
                        values.add(childReps[j]);
                    }
                    if (childReps[j] instanceof Group) {
                        values.add((Group) childReps[j]);
                        allSegmentFromGroup.clear();
                        getAllSegmentsFromGroup((Group) childReps[j]);
                    }
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sModel = new SegmentModel((Segment) childReps[j], messParent, i, j);
                        if (sModel.getTypes() != null && sModel.getTypes().length > 0) {
                            values.add(sModel);
                            if (!allSegmentsForMessage.contains(sModel)) {
                                allSegmentsForMessage.add(sModel);
                            }
                        }
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values.toArray();
    }
    if (parentElement instanceof Segment) {
        values.clear();
        Segment segment = (Segment) parentElement;
        SegmentModel sm = new SegmentModel(segment, segment, 0, 0);
        return sm.getTypes();
    }
    if (parentElement instanceof SegmentModel) {
        SegmentModel sm = (SegmentModel) parentElement;
        return sm.getTypes();
    }
    if (parentElement instanceof TypeModel) {
        TypeModel tm = (TypeModel) parentElement;
        return tm.getPrimitives();
    }
    if (parentElement instanceof Group) {
        values.clear();
        Group group = (Group) parentElement;
        String[] childNames = group.getNames();
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = group.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sm = new SegmentModel((Segment) childReps[j], group, i, j);
                        if (sm.getTypes() != null && sm.getTypes().length > 0) {
                            values.add(sm);
                        }
                    } else {
                        values.add(childReps[j]);
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values.toArray();
    }
    return new Object[0];
}

Example 45 with HL7Exception

use of ca.uhn.hl7v2.HL7Exception in project tdi-studio-se by Talend.

the class HL7PublicUtil method getChildList.

public Object[] getChildList(Object parentElement) {
    List values = new ArrayList();
    if (parentElement instanceof Message) {
        Message messParent = (Message) parentElement;
        String[] childNames = messParent.getNames();
        if (!values.isEmpty()) {
            values.clear();
        }
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = messParent.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Message) {
                        values.add(childReps[j]);
                    }
                    if (childReps[j] instanceof Group) {
                        allSegmentFromGroup.clear();
                        getAllSegmentsFromGroup((Group) childReps[j]);
                        if (allSegmentFromGroup.size() > 0) {
                            values.addAll(Arrays.asList(allSegmentFromGroup.toArray(new SegmentModel[0])));
                        }
                    }
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sModel = new SegmentModel((Segment) childReps[j], messParent, i, j);
                        if (sModel.getTypes() != null && sModel.getTypes().length > 0) {
                            values.add(sModel);
                            if (!allSegmentsForMessage.contains(sModel)) {
                                allSegmentsForMessage.add(sModel);
                            }
                        }
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values.toArray();
    }
    if (parentElement instanceof Segment) {
        values.clear();
        Segment segment = (Segment) parentElement;
        SegmentModel sm = new SegmentModel(segment, segment, 0, 0);
        return sm.getTypes();
    }
    if (parentElement instanceof SegmentModel) {
        SegmentModel sm = (SegmentModel) parentElement;
        return sm.getTypes();
    }
    if (parentElement instanceof TypeModel) {
        TypeModel tm = (TypeModel) parentElement;
        return tm.getPrimitives();
    }
    if (parentElement instanceof Group) {
        values.clear();
        Group group = (Group) parentElement;
        String[] childNames = group.getNames();
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = group.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sm = new SegmentModel((Segment) childReps[j], group, i, j);
                        if (sm.getTypes() != null && sm.getTypes().length > 0) {
                            values.add(sm);
                        }
                    } else {
                        values.add(childReps[j]);
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values.toArray();
    }
    return new Object[0];
}