Examples with RemoteProxyException cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException used on opensource projects

Example 6 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method initAllDatabaseInfos.

/**
 * Insert the method's description here.
 * Creation date: (9/25/2003 7:45:19 AM)
 * @return cbit.vcell.modeldb.VCInfoContainer
 */
public synchronized void initAllDatabaseInfos() throws DataAccessException {
    clear();
    VCInfoContainer vcInfoContainer = null;
    try {
        System.out.println("ClientDocumentManager.initAllDatabaseInfos()");
        long time1 = System.currentTimeMillis();
        // 
        // gets BioModelMetaDatas, MathModelMetaDatas, all VersionInfos, and ResultSetInfos
        // 
        vcInfoContainer = sessionManager.getUserMetaDbServer().getVCInfoContainer();
        PerformanceMonitorEvent pme = new PerformanceMonitorEvent(this, getUser(), new PerformanceData("ClientDocumentManager.initAllDatabaseInfos()", MessageEvent.LOGON_STAT, new PerformanceDataEntry[] { new PerformanceDataEntry("remote call duration", Double.toString(((double) System.currentTimeMillis() - time1) / 1000.0)) }));
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException("RemoteProxyException: " + e.getMessage());
    }
    // 
    // BioModelInfos
    // 
    {
        bioModelInfoHash.clear();
        BioModelInfo[] bioModelInfos = vcInfoContainer.getBioModelInfos();
        if (bioModelInfos != null) {
            for (int i = 0; i < bioModelInfos.length; i++) {
                bioModelInfoHash.put(bioModelInfos[i].getVersion().getVersionKey(), bioModelInfos[i]);
            }
        }
    }
    // 
    // Geometries
    // 
    {
        geoInfoHash.clear();
        GeometryInfo[] geometryInfos = vcInfoContainer.getGeometryInfos();
        if (geometryInfos != null) {
            for (int i = 0; i < geometryInfos.length; i++) {
                geoInfoHash.put(geometryInfos[i].getVersion().getVersionKey(), geometryInfos[i]);
            }
        }
    }
    // 
    // MathModelInfos
    // 
    {
        mathModelInfoHash.clear();
        MathModelInfo[] mathModelInfos = vcInfoContainer.getMathModelInfos();
        if (mathModelInfos != null) {
            for (int i = 0; i < mathModelInfos.length; i++) {
                mathModelInfoHash.put(mathModelInfos[i].getVersion().getVersionKey(), mathModelInfos[i]);
            }
        }
    }
    // 
    // VCImageInfos
    // 
    {
        imgInfoHash.clear();
        VCImageInfo[] vcImageInfos = vcInfoContainer.getVCImageInfos();
        if (vcImageInfos != null) {
            for (int i = 0; i < vcImageInfos.length; i++) {
                imgInfoHash.put(vcImageInfos[i].getVersion().getVersionKey(), vcImageInfos[i]);
            }
        }
    }
    fireDatabaseRefresh(new DatabaseEvent(this, DatabaseEvent.REFRESH, null, null));
}

Example 7 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method removeUserFromGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public BioModelInfo removeUserFromGroup(BioModelInfo bioModelInfo, String userToRemove) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        BioModelInfo newBioModelInfo = (BioModelInfo) removeUserFromGroup0(bioModelInfo, VersionableType.BioModelMetaData, bioModelInfoHash, userToRemove);
        // 
        // delete BioModelMetaData from cache
        // 
        xmlHash.remove(bioModelInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, bioModelInfo, newBioModelInfo));
        return newBioModelInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 8 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method save.

/**
 * Insert the method's description here.
 * Creation date: (10/28/00 12:08:30 AM)
 */
public MathModel save(MathModel mathModel, String[] independentSims) throws DataAccessException {
    try {
        String mathModelXML = null;
        try {
            mathModelXML = XmlHelper.mathModelToXML(mathModel);
            if (LG.isInfoEnabled()) {
                LG.info(XmlUtil.beautify(mathModelXML));
            }
        } catch (XmlParseException e) {
            e.printStackTrace(System.out);
            throw new DataAccessException(e.getMessage());
        }
        String savedMathModelXML = sessionManager.getUserMetaDbServer().saveMathModel(new BigString(mathModelXML), independentSims).toString();
        MathModel savedMathModel = getMathModelFromDatabaseXML(new XMLHolder<MathModel>(savedMathModelXML));
        if (LG.isInfoEnabled()) {
            LG.info(XmlUtil.beautify(savedMathModelXML));
        }
        KeyValue savedKey = savedMathModel.getVersion().getVersionKey();
        if (xmlHash.get(savedKey) == null) {
            xmlHash.put(savedKey, savedMathModelXML);
        }
        MathModelInfo savedMathModelInfo = new MathModelInfo(savedMathModel.getVersion(), savedMathModel.getMathDescription().getKey(), savedMathModel.createMathModelChildSummary(), VCellSoftwareVersion.fromSystemProperty());
        mathModelInfoHash.put(savedKey, savedMathModelInfo);
        updateGeometryRelatedHashes(savedMathModel.getMathDescription().getGeometry());
        fireDatabaseInsert(new DatabaseEvent(this, DatabaseEvent.INSERT, null, savedMathModelInfo));
        return savedMathModel;
    } catch (RemoteProxyException e) {
        e.printStackTrace(System.out);
        throw new DataAccessException(VCellErrorMessages.FAIL_SAVE_MESSAGE + "\n\n" + e.getMessage());
    }
}

Example 9 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method addUserToGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public VCImageInfo addUserToGroup(VCImageInfo imageInfo, String userToAdd) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        VCImageInfo newImageInfo = (VCImageInfo) addUserToGroup0(imageInfo, VersionableType.VCImage, imgInfoHash, userToAdd);
        // 
        // delete Image from cache
        // 
        xmlHash.remove(imageInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, imageInfo, newImageInfo));
        return newImageInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 10 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method removeUserFromGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public MathModelInfo removeUserFromGroup(MathModelInfo mathModelInfo, String userToRemove) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        MathModelInfo newMathModelInfo = (MathModelInfo) removeUserFromGroup0(mathModelInfo, VersionableType.MathModelMetaData, mathModelInfoHash, userToRemove);
        // 
        // delete MathModelMetaData from cache
        // 
        xmlHash.remove(mathModelInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, mathModelInfo, newMathModelInfo));
        return newMathModelInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}