Examples with RemoteProxyException cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException used on opensource projects

Example 26 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method delete.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public void delete(GeometryInfo geometryInfo) throws DataAccessException {
    try {
        // 
        // delete from database
        // 
        sessionManager.getUserMetaDbServer().deleteGeometry(geometryInfo.getVersion().getVersionKey());
        // 
        // delete Geometry from cache and GeometryInfo from geometryInfo list
        // 
        xmlHash.remove(geometryInfo.getVersion().getVersionKey());
        geoInfoHash.remove(geometryInfo.getVersion().getVersionKey());
        fireDatabaseDelete(new DatabaseEvent(this, DatabaseEvent.DELETE, geometryInfo, null));
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 27 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method setGroupPrivate.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public BioModelInfo setGroupPrivate(BioModelInfo bioModelInfo) throws DataAccessException {
    try {
        // 
        // unpublish from database
        // 
        BioModelInfo newBioModelInfo = (BioModelInfo) setGroupPrivate0(bioModelInfo, VersionableType.BioModelMetaData, bioModelInfoHash);
        // 
        // delete BioModelMetaData from cache
        // 
        xmlHash.remove(bioModelInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, bioModelInfo, newBioModelInfo));
        return newBioModelInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 28 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method delete.

/**
 * Insert the method's description here.
 * Creation date: (3/26/2001 11:26:16 PM)
 * @param bioModelInfo cbit.vcell.mathmodel.MathModelInfo
 */
public void delete(MathModelInfo mathModelInfo) throws DataAccessException {
    try {
        // MathModelMetaData mathModelMetaData = getMathModelMetaData(mathModelInfo);
        // 
        // delete from database
        // 
        sessionManager.getUserMetaDbServer().deleteMathModel(mathModelInfo.getVersion().getVersionKey());
        // 
        // delete MathModel from cache and MathModelInfo from mathModelInfo list
        // 
        xmlHash.remove(mathModelInfo.getVersion().getVersionKey());
        mathModelInfoHash.remove(mathModelInfo.getVersion().getVersionKey());
        fireDatabaseDelete(new DatabaseEvent(this, DatabaseEvent.DELETE, mathModelInfo, null));
    // //
    // // go through list of Simulations in the MathModelMetaData and remove unreferenced Simulations
    // //
    // Enumeration enumSim = mathModelMetaData.getSimulationInfos();
    // while (enumSim.hasMoreElements()){
    // SimulationInfo simInfo = (SimulationInfo)enumSim.nextElement();
    // if (isSimulationReferenced(simInfo)==false){
    // simInfoHash.remove(simInfo.getVersion().getVersionKey());
    // resultSetInfoHash.remove(simInfo.getVersion().getVersionKey());
    // fireDatabaseDelete(new DatabaseEvent(this, DatabaseEvent.DELETE, simInfo, null));
    // }
    // }
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 29 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method getReactionStepAsModel.

/**
 * Insert the method's description here.
 * Creation date: (8/25/2003 5:10:41 PM)
 */
public Model getReactionStepAsModel(KeyValue reactionStepKey) throws DataAccessException {
    try {
        Model reactionModel = sessionManager.getUserMetaDbServer().getReactionStepAsModel(reactionStepKey);
        if (reactionModel != null) {
            try {
                reactionModel = (Model) BeanUtils.cloneSerializable(reactionModel);
                reactionModel.refreshDependencies();
            } catch (Exception e) {
                e.printStackTrace(System.out);
                throw new DataAccessException(e.getMessage());
            }
        }
        return reactionModel;
    } catch (RemoteProxyException e) {
        e.printStackTrace(System.out);
        throw new DataAccessException(e.getMessage());
    }
}

Example 30 with RemoteProxyException

use of cbit.vcell.message.server.bootstrap.client.RemoteProxyVCellConnectionFactory.RemoteProxyException in project vcell by virtualcell.

the class ClientDocumentManager method save.

/**
 * Insert the method's description here.
 * Creation date: (10/28/00 12:08:30 AM)
 */
public BioModel save(BioModel bioModel, String[] independentSims) throws DataAccessException {
    try {
        String bioModelXML = null;
        try {
            bioModel.getVCMetaData().cleanupMetadata();
            bioModelXML = XmlHelper.bioModelToXML(bioModel);
        } catch (XmlParseException e) {
            e.printStackTrace(System.out);
            throw new DataAccessException(e.getMessage());
        }
        String savedBioModelXML = sessionManager.getUserMetaDbServer().saveBioModel(new BigString(bioModelXML), independentSims).toString();
        BioModel savedBioModel = getBioModelFromDatabaseXML(new XMLHolder<BioModel>(savedBioModelXML));
        KeyValue savedKey = savedBioModel.getVersion().getVersionKey();
        if (xmlHash.get(savedKey) == null) {
            xmlHash.put(savedKey, savedBioModelXML);
        }
        BioModelInfo savedBioModelInfo = new BioModelInfo(savedBioModel.getVersion(), savedBioModel.getModel().getKey(), savedBioModel.createBioModelChildSummary(), VCellSoftwareVersion.fromSystemProperty());
        bioModelInfoHash.put(savedKey, savedBioModelInfo);
        SimulationContext[] scArr = savedBioModel.getSimulationContexts();
        for (int i = 0; i < scArr.length; i++) {
            updateGeometryRelatedHashes(scArr[i].getGeometry());
        }
        // copy some transient info from the old model to the new one
        for (SimulationContext newsc : scArr) {
            SimulationContext oldsc = bioModel.getSimulationContext(newsc.getName());
            newsc.getTaskCallbackProcessor().initialize((oldsc.getTaskCallbackProcessor()));
            newsc.setMostRecentlyCreatedOutputSpec(oldsc.getMostRecentlyCreatedOutputSpec());
            newsc.setMd5hash(oldsc.getMd5hash());
        }
        fireDatabaseInsert(new DatabaseEvent(this, DatabaseEvent.INSERT, null, savedBioModelInfo));
        return savedBioModel;
    } catch (RemoteProxyException e) {
        e.printStackTrace(System.out);
        throw new DataAccessException(VCellErrorMessages.FAIL_SAVE_MESSAGE + "\n\n" + e.getMessage());
    }
}