Examples with Event de.symeda.sormas.backend.event.Event used on opensource projects

Example 1 with Event

use of de.symeda.sormas.backend.event.Event in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjb method getExportList.

@Override
@TransactionAttribute(TransactionAttributeType.REQUIRES_NEW)
public List<CaseExportDto> getExportList(CaseCriteria caseCriteria, Collection<String> selectedRows, CaseExportType exportType, int first, int max, ExportConfigurationDto exportConfiguration, Language userLanguage) {
    Boolean previousCaseManagementDataCriteria = caseCriteria.getMustHaveCaseManagementData();
    if (CaseExportType.CASE_MANAGEMENT == exportType) {
        caseCriteria.setMustHaveCaseManagementData(Boolean.TRUE);
    }
    CriteriaBuilder cb = em.getCriteriaBuilder();
    CriteriaQuery<CaseExportDto> cq = cb.createQuery(CaseExportDto.class);
    Root<Case> caseRoot = cq.from(Case.class);
    final CaseQueryContext caseQueryContext = new CaseQueryContext(cb, cq, caseRoot);
    final CaseJoins<Case> joins = (CaseJoins<Case>) caseQueryContext.getJoins();
    // Events count subquery
    Subquery<Long> eventCountSq = cq.subquery(Long.class);
    Root<EventParticipant> eventCountRoot = eventCountSq.from(EventParticipant.class);
    Join<EventParticipant, Event> event = eventCountRoot.join(EventParticipant.EVENT, JoinType.INNER);
    Join<EventParticipant, Case> resultingCase = eventCountRoot.join(EventParticipant.RESULTING_CASE, JoinType.INNER);
    eventCountSq.where(cb.and(cb.equal(resultingCase.get(Case.ID), caseRoot.get(Case.ID)), cb.isFalse(event.get(Event.DELETED)), cb.isFalse(event.get(Event.ARCHIVED)), cb.isFalse(eventCountRoot.get(EventParticipant.DELETED))));
    eventCountSq.select(cb.countDistinct(event.get(Event.ID)));
    // @formatter:off
    cq.multiselect(caseRoot.get(Case.ID), joins.getPerson().get(Person.ID), joins.getPersonAddress().get(Location.ID), joins.getEpiData().get(EpiData.ID), joins.getSymptoms().get(Symptoms.ID), joins.getHospitalization().get(Hospitalization.ID), joins.getHealthConditions().get(HealthConditions.ID), caseRoot.get(Case.UUID), caseRoot.get(Case.EPID_NUMBER), caseRoot.get(Case.DISEASE), caseRoot.get(Case.DISEASE_VARIANT), caseRoot.get(Case.DISEASE_DETAILS), caseRoot.get(Case.DISEASE_VARIANT_DETAILS), joins.getPerson().get(Person.UUID), joins.getPerson().get(Person.FIRST_NAME), joins.getPerson().get(Person.LAST_NAME), joins.getPerson().get(Person.SALUTATION), joins.getPerson().get(Person.OTHER_SALUTATION), joins.getPerson().get(Person.SEX), caseRoot.get(Case.PREGNANT), joins.getPerson().get(Person.APPROXIMATE_AGE), joins.getPerson().get(Person.APPROXIMATE_AGE_TYPE), joins.getPerson().get(Person.BIRTHDATE_DD), joins.getPerson().get(Person.BIRTHDATE_MM), joins.getPerson().get(Person.BIRTHDATE_YYYY), caseRoot.get(Case.REPORT_DATE), joins.getRegion().get(Region.NAME), joins.getDistrict().get(District.NAME), joins.getCommunity().get(Community.NAME), caseRoot.get(Case.FACILITY_TYPE), joins.getFacility().get(Facility.NAME), joins.getFacility().get(Facility.UUID), caseRoot.get(Case.HEALTH_FACILITY_DETAILS), joins.getPointOfEntry().get(PointOfEntry.NAME), joins.getPointOfEntry().get(PointOfEntry.UUID), caseRoot.get(Case.POINT_OF_ENTRY_DETAILS), caseRoot.get(Case.CASE_CLASSIFICATION), caseRoot.get(Case.CLINICAL_CONFIRMATION), caseRoot.get(Case.EPIDEMIOLOGICAL_CONFIRMATION), caseRoot.get(Case.LABORATORY_DIAGNOSTIC_CONFIRMATION), caseRoot.get(Case.NOT_A_CASE_REASON_NEGATIVE_TEST), caseRoot.get(Case.NOT_A_CASE_REASON_PHYSICIAN_INFORMATION), caseRoot.get(Case.NOT_A_CASE_REASON_DIFFERENT_PATHOGEN), caseRoot.get(Case.NOT_A_CASE_REASON_OTHER), caseRoot.get(Case.NOT_A_CASE_REASON_DETAILS), caseRoot.get(Case.INVESTIGATION_STATUS), caseRoot.get(Case.INVESTIGATED_DATE), caseRoot.get(Case.OUTCOME), caseRoot.get(Case.OUTCOME_DATE), caseRoot.get(Case.SEQUELAE), caseRoot.get(Case.SEQUELAE_DETAILS), caseRoot.get(Case.BLOOD_ORGAN_OR_TISSUE_DONATED), caseRoot.get(Case.FOLLOW_UP_STATUS), caseRoot.get(Case.FOLLOW_UP_UNTIL), caseRoot.get(Case.NOSOCOMIAL_OUTBREAK), caseRoot.get(Case.INFECTION_SETTING), caseRoot.get(Case.PROHIBITION_TO_WORK), caseRoot.get(Case.PROHIBITION_TO_WORK_FROM), caseRoot.get(Case.PROHIBITION_TO_WORK_UNTIL), caseRoot.get(Case.RE_INFECTION), caseRoot.get(Case.PREVIOUS_INFECTION_DATE), caseRoot.get(Case.REINFECTION_STATUS), caseRoot.get(Case.REINFECTION_DETAILS), // quarantine
    caseRoot.get(Case.QUARANTINE), caseRoot.get(Case.QUARANTINE_TYPE_DETAILS), caseRoot.get(Case.QUARANTINE_FROM), caseRoot.get(Case.QUARANTINE_TO), caseRoot.get(Case.QUARANTINE_HELP_NEEDED), caseRoot.get(Case.QUARANTINE_ORDERED_VERBALLY), caseRoot.get(Case.QUARANTINE_ORDERED_OFFICIAL_DOCUMENT), caseRoot.get(Case.QUARANTINE_ORDERED_VERBALLY_DATE), caseRoot.get(Case.QUARANTINE_ORDERED_OFFICIAL_DOCUMENT_DATE), caseRoot.get(Case.QUARANTINE_EXTENDED), caseRoot.get(Case.QUARANTINE_REDUCED), caseRoot.get(Case.QUARANTINE_OFFICIAL_ORDER_SENT), caseRoot.get(Case.QUARANTINE_OFFICIAL_ORDER_SENT_DATE), joins.getHospitalization().get(Hospitalization.ADMITTED_TO_HEALTH_FACILITY), joins.getHospitalization().get(Hospitalization.ADMISSION_DATE), joins.getHospitalization().get(Hospitalization.DISCHARGE_DATE), joins.getHospitalization().get(Hospitalization.LEFT_AGAINST_ADVICE), joins.getPerson().get(Person.PRESENT_CONDITION), joins.getPerson().get(Person.DEATH_DATE), joins.getPerson().get(Person.BURIAL_DATE), joins.getPerson().get(Person.BURIAL_CONDUCTOR), joins.getPerson().get(Person.BURIAL_PLACE_DESCRIPTION), // address
    joins.getPersonAddressRegion().get(Region.NAME), joins.getPersonAddressDistrict().get(District.NAME), joins.getPersonAddressCommunity().get(Community.NAME), joins.getPersonAddress().get(Location.CITY), joins.getPersonAddress().get(Location.STREET), joins.getPersonAddress().get(Location.HOUSE_NUMBER), joins.getPersonAddress().get(Location.ADDITIONAL_INFORMATION), joins.getPersonAddress().get(Location.POSTAL_CODE), joins.getPersonAddressFacility().get(Facility.NAME), joins.getPersonAddressFacility().get(Facility.UUID), joins.getPersonAddress().get(Location.FACILITY_DETAILS), // phone
    caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_PHONE_SUBQUERY), caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_PHONE_OWNER_SUBQUERY), caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_EMAIL_SUBQUERY), caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_OTHER_CONTACT_DETAILS_SUBQUERY), joins.getPerson().get(Person.EDUCATION_TYPE), joins.getPerson().get(Person.EDUCATION_DETAILS), joins.getPerson().get(Person.OCCUPATION_TYPE), joins.getPerson().get(Person.OCCUPATION_DETAILS), joins.getPerson().get(Person.ARMED_FORCES_RELATION_TYPE), joins.getEpiData().get(EpiData.CONTACT_WITH_SOURCE_CASE_KNOWN), caseRoot.get(Case.VACCINATION_STATUS), caseRoot.get(Case.POSTPARTUM), caseRoot.get(Case.TRIMESTER), eventCountSq, caseRoot.get(Case.EXTERNAL_ID), caseRoot.get(Case.EXTERNAL_TOKEN), caseRoot.get(Case.INTERNAL_TOKEN), joins.getPerson().get(Person.BIRTH_NAME), joins.getPersonBirthCountry().get(Country.ISO_CODE), joins.getPersonBirthCountry().get(Country.DEFAULT_NAME), joins.getPersonCitizenship().get(Country.ISO_CODE), joins.getPersonCitizenship().get(Country.DEFAULT_NAME), caseRoot.get(Case.CASE_IDENTIFICATION_SOURCE), caseRoot.get(Case.SCREENING_TYPE), // responsible jurisdiction
    joins.getResponsibleRegion().get(Region.NAME), joins.getResponsibleDistrict().get(District.NAME), joins.getResponsibleCommunity().get(Community.NAME), caseRoot.get(Case.CLINICIAN_NAME), caseRoot.get(Case.CLINICIAN_PHONE), caseRoot.get(Case.CLINICIAN_EMAIL), joins.getReportingUser().get(User.ID), joins.getFollowUpStatusChangeUser().get(User.ID), caseRoot.get(Case.PREVIOUS_QUARANTINE_TO), caseRoot.get(Case.QUARANTINE_CHANGE_COMMENT), JurisdictionHelper.booleanSelector(cb, service.inJurisdictionOrOwned(caseQueryContext)));
    // @formatter:on
    cq.distinct(true);
    Predicate filter = service.createUserFilter(cb, cq, caseRoot);
    if (caseCriteria != null) {
        Predicate criteriaFilter = service.createCriteriaFilter(caseCriteria, caseQueryContext);
        filter = CriteriaBuilderHelper.and(cb, filter, criteriaFilter);
    }
    filter = CriteriaBuilderHelper.andInValues(selectedRows, filter, cb, caseRoot.get(Case.UUID));
    if (filter != null) {
        cq.where(filter);
    }
    /*
		 * Sort by report date DESC, but also by id for stable Sorting in case of equal report dates.
		 * Since this method supports paging, values might jump between pages when sorting is unstable.
		 */
    cq.orderBy(cb.desc(caseRoot.get(Case.REPORT_DATE)), cb.desc(caseRoot.get(Case.ID)));
    List<CaseExportDto> resultList = QueryHelper.getResultList(em, cq, first, max);
    List<Long> resultCaseIds = resultList.stream().map(CaseExportDto::getId).collect(Collectors.toList());
    if (!resultList.isEmpty()) {
        Map<Long, Symptoms> symptoms = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseDataDto.SYMPTOMS)) {
            List<Symptoms> symptomsList = null;
            CriteriaQuery<Symptoms> symptomsCq = cb.createQuery(Symptoms.class);
            Root<Symptoms> symptomsRoot = symptomsCq.from(Symptoms.class);
            Expression<String> symptomsIdsExpr = symptomsRoot.get(Symptoms.ID);
            symptomsCq.where(symptomsIdsExpr.in(resultList.stream().map(CaseExportDto::getSymptomsId).collect(Collectors.toList())));
            symptomsList = em.createQuery(symptomsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            symptoms = symptomsList.stream().collect(Collectors.toMap(Symptoms::getId, Function.identity()));
        }
        Map<Long, Location> personAddresses = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, PersonDto.ADDRESS, CaseExportDto.ADDRESS_GPS_COORDINATES)) {
            CriteriaQuery<Location> personAddressesCq = cb.createQuery(Location.class);
            Root<Location> personAddressesRoot = personAddressesCq.from(Location.class);
            Expression<String> personAddressesIdsExpr = personAddressesRoot.get(Location.ID);
            personAddressesCq.where(personAddressesIdsExpr.in(resultList.stream().map(CaseExportDto::getPersonAddressId).collect(Collectors.toList())));
            List<Location> personAddressesList = em.createQuery(personAddressesCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            personAddresses = personAddressesList.stream().collect(Collectors.toMap(Location::getId, Function.identity()));
        }
        Map<Long, Integer> prescriptionCounts = null;
        Map<Long, Integer> treatmentCounts = null;
        Map<Long, Integer> clinicalVisitCounts = null;
        Map<Long, HealthConditions> healthConditions = null;
        if (exportType == null || exportType == CaseExportType.CASE_MANAGEMENT) {
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_PRESCRIPTIONS)) {
                prescriptionCounts = prescriptionService.getPrescriptionCountByCases(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> ((Long) e[1]).intValue()));
            }
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_TREATMENTS)) {
                treatmentCounts = treatmentService.getTreatmentCountByCases(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> ((Long) e[1]).intValue()));
            }
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_CLINICAL_VISITS)) {
                clinicalVisitCounts = clinicalVisitService.getClinicalVisitCountByCases(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> ((Long) e[1]).intValue()));
            }
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseDataDto.HEALTH_CONDITIONS)) {
                List<HealthConditions> healthConditionsList = null;
                CriteriaQuery<HealthConditions> healthConditionsCq = cb.createQuery(HealthConditions.class);
                Root<HealthConditions> healthConditionsRoot = healthConditionsCq.from(HealthConditions.class);
                Expression<String> healthConditionsIdsExpr = healthConditionsRoot.get(HealthConditions.ID);
                healthConditionsCq.where(healthConditionsIdsExpr.in(resultList.stream().map(CaseExportDto::getHealthConditionsId).collect(Collectors.toList())));
                healthConditionsList = em.createQuery(healthConditionsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
                healthConditions = healthConditionsList.stream().collect(Collectors.toMap(HealthConditions::getId, Function.identity()));
            }
        }
        Map<Long, PreviousHospitalization> firstPreviousHospitalizations = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.INITIAL_DETECTION_PLACE)) {
            List<PreviousHospitalization> prevHospsList = null;
            CriteriaQuery<PreviousHospitalization> prevHospsCq = cb.createQuery(PreviousHospitalization.class);
            Root<PreviousHospitalization> prevHospsRoot = prevHospsCq.from(PreviousHospitalization.class);
            Join<PreviousHospitalization, Hospitalization> prevHospsHospitalizationJoin = prevHospsRoot.join(PreviousHospitalization.HOSPITALIZATION, JoinType.LEFT);
            Expression<String> hospitalizationIdsExpr = prevHospsHospitalizationJoin.get(Hospitalization.ID);
            prevHospsCq.where(hospitalizationIdsExpr.in(resultList.stream().map(CaseExportDto::getHospitalizationId).collect(Collectors.toList())));
            prevHospsCq.orderBy(cb.asc(prevHospsRoot.get(PreviousHospitalization.ADMISSION_DATE)));
            prevHospsList = em.createQuery(prevHospsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            firstPreviousHospitalizations = prevHospsList.stream().collect(Collectors.toMap(p -> p.getHospitalization().getId(), Function.identity(), (id1, id2) -> id1));
        }
        Map<Long, CaseClassification> sourceCaseClassifications = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.MAX_SOURCE_CASE_CLASSIFICATION)) {
            sourceCaseClassifications = contactService.getSourceCaseClassifications(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> (CaseClassification) e[1], (c1, c2) -> c1.getSeverity() >= c2.getSeverity() ? c1 : c2));
        }
        List<Long> caseIdsWithOutbreak = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.ASSOCIATED_WITH_OUTBREAK)) {
            caseIdsWithOutbreak = outbreakService.getCaseIdsWithOutbreak(resultCaseIds);
        }
        Map<Long, List<Exposure>> exposures = null;
        if ((exportType == null || exportType == CaseExportType.CASE_SURVEILLANCE) && ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.TRAVELED, CaseExportDto.TRAVEL_HISTORY, CaseExportDto.BURIAL_ATTENDED)) {
            CriteriaQuery<Exposure> exposuresCq = cb.createQuery(Exposure.class);
            Root<Exposure> exposuresRoot = exposuresCq.from(Exposure.class);
            Join<Exposure, EpiData> exposuresEpiDataJoin = exposuresRoot.join(Exposure.EPI_DATA, JoinType.LEFT);
            Expression<String> epiDataIdsExpr = exposuresEpiDataJoin.get(EpiData.ID);
            Predicate exposuresPredicate = cb.and(epiDataIdsExpr.in(resultList.stream().map(CaseExportDto::getEpiDataId).collect(Collectors.toList())), cb.or(cb.equal(exposuresRoot.get(Exposure.EXPOSURE_TYPE), ExposureType.TRAVEL), cb.equal(exposuresRoot.get(Exposure.EXPOSURE_TYPE), ExposureType.BURIAL)));
            exposuresCq.where(exposuresPredicate);
            exposuresCq.orderBy(cb.asc(exposuresEpiDataJoin.get(EpiData.ID)));
            List<Exposure> exposureList = em.createQuery(exposuresCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            exposures = exposureList.stream().collect(Collectors.groupingBy(e -> e.getEpiData().getId()));
        }
        Map<Long, List<Sample>> samples = null;
        if ((exportType == null || exportType == CaseExportType.CASE_SURVEILLANCE) && ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.SAMPLE_INFORMATION)) {
            List<Sample> samplesList = null;
            CriteriaQuery<Sample> samplesCq = cb.createQuery(Sample.class);
            Root<Sample> samplesRoot = samplesCq.from(Sample.class);
            Join<Sample, Case> samplesCaseJoin = samplesRoot.join(Sample.ASSOCIATED_CASE, JoinType.LEFT);
            Expression<String> caseIdsExpr = samplesCaseJoin.get(Case.ID);
            samplesCq.where(caseIdsExpr.in(resultCaseIds));
            samplesList = em.createQuery(samplesCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            samples = samplesList.stream().collect(Collectors.groupingBy(s -> s.getAssociatedCase().getId()));
        }
        List<VisitSummaryExportDetails> visitSummaries = null;
        if (featureConfigurationFacade.isFeatureEnabled(FeatureType.CASE_FOLLOWUP) && ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_VISITS, CaseExportDto.LAST_COOPERATIVE_VISIT_DATE, CaseExportDto.LAST_COOPERATIVE_VISIT_SYMPTOMATIC, CaseExportDto.LAST_COOPERATIVE_VISIT_SYMPTOMS)) {
            CriteriaQuery<VisitSummaryExportDetails> visitsCq = cb.createQuery(VisitSummaryExportDetails.class);
            Root<Case> visitsCqRoot = visitsCq.from(Case.class);
            Join<Case, Visit> visitsJoin = visitsCqRoot.join(Case.VISITS, JoinType.LEFT);
            Join<Visit, Symptoms> visitSymptomsJoin = visitsJoin.join(Visit.SYMPTOMS, JoinType.LEFT);
            visitsCq.where(CriteriaBuilderHelper.and(cb, visitsCqRoot.get(AbstractDomainObject.ID).in(resultCaseIds), cb.isNotEmpty(visitsCqRoot.get(Case.VISITS))));
            visitsCq.multiselect(visitsCqRoot.get(AbstractDomainObject.ID), visitsJoin.get(Visit.VISIT_DATE_TIME), visitsJoin.get(Visit.VISIT_STATUS), visitSymptomsJoin);
            visitSummaries = em.createQuery(visitsCq).getResultList();
        }
        Map<Long, List<Immunization>> immunizations = null;
        if ((exportType == null || exportType == CaseExportType.CASE_SURVEILLANCE) && (exportConfiguration == null || exportConfiguration.getProperties().stream().anyMatch(p -> StringUtils.equalsAny(p, ExportHelper.getVaccinationExportProperties())))) {
            List<Immunization> immunizationList;
            CriteriaQuery<Immunization> immunizationsCq = cb.createQuery(Immunization.class);
            Root<Immunization> immunizationsCqRoot = immunizationsCq.from(Immunization.class);
            Join<Immunization, Person> personJoin = immunizationsCqRoot.join(Immunization.PERSON, JoinType.LEFT);
            Expression<String> personIdsExpr = personJoin.get(Person.ID);
            immunizationsCq.where(CriteriaBuilderHelper.and(cb, cb.or(cb.equal(immunizationsCqRoot.get(Immunization.MEANS_OF_IMMUNIZATION), MeansOfImmunization.VACCINATION), cb.equal(immunizationsCqRoot.get(Immunization.MEANS_OF_IMMUNIZATION), MeansOfImmunization.VACCINATION_RECOVERY)), personIdsExpr.in(resultList.stream().map(CaseExportDto::getPersonId).collect(Collectors.toList()))));
            immunizationsCq.select(immunizationsCqRoot);
            immunizationList = em.createQuery(immunizationsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            immunizations = immunizationList.stream().collect(Collectors.groupingBy(i -> i.getPerson().getId()));
        }
        // Load latest events info
        // Adding a second query here is not perfect, but selecting the last event with a criteria query
        // doesn't seem to be possible and using a native query is not an option because of user filters
        List<EventSummaryDetails> eventSummaries = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.LATEST_EVENT_ID, CaseExportDto.LATEST_EVENT_STATUS, CaseExportDto.LATEST_EVENT_TITLE)) {
            eventSummaries = eventService.getEventSummaryDetailsByCases(resultCaseIds);
        }
        Map<Long, UserReference> caseUsers = getCaseUsersForExport(resultList, exportConfiguration);
        Pseudonymizer pseudonymizer = Pseudonymizer.getDefault(userService::hasRight, I18nProperties.getCaption(Captions.inaccessibleValue));
        for (CaseExportDto exportDto : resultList) {
            final boolean inJurisdiction = exportDto.getInJurisdiction();
            if (exportConfiguration == null || exportConfiguration.getProperties().contains(CaseExportDto.COUNTRY)) {
                exportDto.setCountry(configFacade.getEpidPrefix());
            }
            if (symptoms != null) {
                Optional.ofNullable(symptoms.get(exportDto.getSymptomsId())).ifPresent(symptom -> exportDto.setSymptoms(SymptomsFacadeEjb.toDto(symptom)));
            }
            if (personAddresses != null || exportConfiguration.getProperties().contains(CaseExportDto.ADDRESS_GPS_COORDINATES)) {
                Optional.ofNullable(personAddresses.get(exportDto.getPersonAddressId())).ifPresent(personAddress -> exportDto.setAddressGpsCoordinates(personAddress.buildGpsCoordinatesCaption()));
            }
            if (prescriptionCounts != null) {
                Optional.ofNullable(prescriptionCounts.get(exportDto.getId())).ifPresent(prescriptionCount -> exportDto.setNumberOfPrescriptions(prescriptionCount));
            }
            if (treatmentCounts != null) {
                Optional.ofNullable(treatmentCounts.get(exportDto.getId())).ifPresent(treatmentCount -> exportDto.setNumberOfTreatments(treatmentCount));
            }
            if (clinicalVisitCounts != null) {
                Optional.ofNullable(clinicalVisitCounts.get(exportDto.getId())).ifPresent(clinicalVisitCount -> exportDto.setNumberOfClinicalVisits(clinicalVisitCount));
            }
            if (healthConditions != null) {
                Optional.ofNullable(healthConditions.get(exportDto.getHealthConditionsId())).ifPresent(healthCondition -> exportDto.setHealthConditions(healthConditionsMapper.toDto(healthCondition)));
            }
            if (firstPreviousHospitalizations != null) {
                Optional.ofNullable(firstPreviousHospitalizations.get(exportDto.getHospitalizationId())).ifPresent(firstPreviousHospitalization -> {
                    if (firstPreviousHospitalization.getHealthFacility() != null) {
                        exportDto.setInitialDetectionPlace(FacilityHelper.buildFacilityString(firstPreviousHospitalization.getHealthFacility().getUuid(), firstPreviousHospitalization.getHealthFacility().getName(), firstPreviousHospitalization.getHealthFacilityDetails()));
                    } else {
                        exportDto.setInitialDetectionPlace(I18nProperties.getCaption(Captions.unknown));
                    }
                });
                if (StringUtils.isEmpty(exportDto.getInitialDetectionPlace())) {
                    if (!StringUtils.isEmpty(exportDto.getHealthFacility())) {
                        exportDto.setInitialDetectionPlace(exportDto.getHealthFacility());
                    } else {
                        exportDto.setInitialDetectionPlace(exportDto.getPointOfEntry());
                    }
                }
            }
            if (sourceCaseClassifications != null) {
                Optional.ofNullable(sourceCaseClassifications.get(exportDto.getId())).ifPresent(sourceCaseClassification -> exportDto.setMaxSourceCaseClassification(sourceCaseClassification));
            }
            if (caseIdsWithOutbreak != null) {
                exportDto.setAssociatedWithOutbreak(caseIdsWithOutbreak.contains(exportDto.getId()));
            }
            if (exposures != null) {
                Optional.ofNullable(exposures.get(exportDto.getEpiDataId())).ifPresent(caseExposures -> {
                    StringBuilder travelHistoryBuilder = new StringBuilder();
                    if (caseExposures.stream().anyMatch(e -> ExposureType.BURIAL.equals(e.getExposureType()))) {
                        exportDto.setBurialAttended(true);
                    }
                    caseExposures.stream().filter(e -> ExposureType.TRAVEL.equals(e.getExposureType())).forEach(exposure -> travelHistoryBuilder.append(EpiDataHelper.buildDetailedTravelString(exposure.getLocation().toString(), exposure.getDescription(), exposure.getStartDate(), exposure.getEndDate(), userLanguage)).append(", "));
                    if (travelHistoryBuilder.length() > 0) {
                        exportDto.setTraveled(true);
                        travelHistoryBuilder.delete(travelHistoryBuilder.lastIndexOf(", "), travelHistoryBuilder.length() - 1);
                    }
                    exportDto.setTravelHistory(travelHistoryBuilder.toString());
                });
            }
            if (samples != null) {
                Optional.ofNullable(samples.get(exportDto.getId())).ifPresent(caseSamples -> {
                    int count = 0;
                    caseSamples.sort((o1, o2) -> o2.getSampleDateTime().compareTo(o1.getSampleDateTime()));
                    for (Sample sample : caseSamples) {
                        EmbeddedSampleExportDto sampleDto = new EmbeddedSampleExportDto(sample.getUuid(), sample.getSampleDateTime(), sample.getLab() != null ? FacilityHelper.buildFacilityString(sample.getLab().getUuid(), sample.getLab().getName(), sample.getLabDetails()) : null, sample.getPathogenTestResult());
                        switch(++count) {
                            case 1:
                                exportDto.setSample1(sampleDto);
                                break;
                            case 2:
                                exportDto.setSample2(sampleDto);
                                break;
                            case 3:
                                exportDto.setSample3(sampleDto);
                                break;
                            default:
                                exportDto.addOtherSample(sampleDto);
                        }
                    }
                });
            }
            if (immunizations != null) {
                Optional.ofNullable(immunizations.get(exportDto.getPersonId())).ifPresent(caseImmunizations -> {
                    List<Immunization> filteredImmunizations = caseImmunizations.stream().filter(i -> i.getDisease() == exportDto.getDisease()).collect(Collectors.toList());
                    if (!filteredImmunizations.isEmpty()) {
                        filteredImmunizations.sort(Comparator.comparing(i -> ImmunizationEntityHelper.getDateForComparison(i, false)));
                        Immunization mostRecentImmunization = filteredImmunizations.get(filteredImmunizations.size() - 1);
                        Integer numberOfDoses = mostRecentImmunization.getNumberOfDoses();
                        exportDto.setNumberOfDoses(numberOfDoses != null ? String.valueOf(numberOfDoses) : "");
                        if (CollectionUtils.isNotEmpty(mostRecentImmunization.getVaccinations())) {
                            List<Vaccination> sortedVaccinations = mostRecentImmunization.getVaccinations().stream().sorted(Comparator.comparing(ImmunizationEntityHelper::getVaccinationDateForComparison)).collect(Collectors.toList());
                            Vaccination firstVaccination = sortedVaccinations.get(0);
                            Vaccination lastVaccination = sortedVaccinations.get(sortedVaccinations.size() - 1);
                            exportDto.setFirstVaccinationDate(firstVaccination.getVaccinationDate());
                            exportDto.setLastVaccinationDate(lastVaccination.getVaccinationDate());
                            exportDto.setVaccineName(lastVaccination.getVaccineName());
                            exportDto.setOtherVaccineName(lastVaccination.getOtherVaccineName());
                            exportDto.setVaccineManufacturer(lastVaccination.getVaccineManufacturer());
                            exportDto.setOtherVaccineManufacturer(lastVaccination.getOtherVaccineManufacturer());
                            exportDto.setVaccinationInfoSource(lastVaccination.getVaccinationInfoSource());
                            exportDto.setVaccineAtcCode(lastVaccination.getVaccineAtcCode());
                            exportDto.setVaccineBatchNumber(lastVaccination.getVaccineBatchNumber());
                            exportDto.setVaccineUniiCode(lastVaccination.getVaccineUniiCode());
                            exportDto.setVaccineInn(lastVaccination.getVaccineInn());
                        }
                    }
                });
            }
            if (visitSummaries != null) {
                List<VisitSummaryExportDetails> visits = visitSummaries.stream().filter(v -> v.getContactId() == exportDto.getId()).collect(Collectors.toList());
                VisitSummaryExportDetails lastCooperativeVisit = visits.stream().filter(v -> v.getVisitStatus() == VisitStatus.COOPERATIVE).max(Comparator.comparing(VisitSummaryExportDetails::getVisitDateTime)).orElse(null);
                exportDto.setNumberOfVisits(visits.size());
                if (lastCooperativeVisit != null) {
                    exportDto.setLastCooperativeVisitDate(lastCooperativeVisit.getVisitDateTime());
                    SymptomsDto visitSymptoms = SymptomsFacadeEjb.toDto(lastCooperativeVisit.getSymptoms());
                    pseudonymizer.pseudonymizeDto(SymptomsDto.class, visitSymptoms, inJurisdiction, null);
                    exportDto.setLastCooperativeVisitSymptoms(SymptomsHelper.buildSymptomsHumanString(visitSymptoms, true, userLanguage));
                    exportDto.setLastCooperativeVisitSymptomatic(visitSymptoms.getSymptomatic() == null ? YesNoUnknown.UNKNOWN : (visitSymptoms.getSymptomatic() ? YesNoUnknown.YES : YesNoUnknown.NO));
                }
            }
            if (eventSummaries != null && exportDto.getEventCount() != 0) {
                eventSummaries.stream().filter(v -> v.getCaseId() == exportDto.getId()).max(Comparator.comparing(EventSummaryDetails::getEventDate)).ifPresent(eventSummary -> {
                    exportDto.setLatestEventId(eventSummary.getEventUuid());
                    exportDto.setLatestEventStatus(eventSummary.getEventStatus());
                    exportDto.setLatestEventTitle(eventSummary.getEventTitle());
                });
            }
            if (!caseUsers.isEmpty()) {
                if (exportDto.getReportingUserId() != null) {
                    UserReference user = caseUsers.get(exportDto.getReportingUserId());
                    exportDto.setReportingUserName(user.getName());
                    exportDto.setReportingUserRoles(user.getUserRoles());
                }
                if (exportDto.getFollowUpStatusChangeUserId() != null) {
                    UserReference user = caseUsers.get(exportDto.getFollowUpStatusChangeUserId());
                    exportDto.setFollowUpStatusChangeUserName(user.getName());
                    exportDto.setFollowUpStatusChangeUserRoles(user.getUserRoles());
                }
            }
            pseudonymizer.pseudonymizeDto(CaseExportDto.class, exportDto, inJurisdiction, c -> {
                pseudonymizer.pseudonymizeDto(BirthDateDto.class, c.getBirthdate(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(EmbeddedSampleExportDto.class, c.getSample1(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(EmbeddedSampleExportDto.class, c.getSample2(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(EmbeddedSampleExportDto.class, c.getSample3(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDtoCollection(EmbeddedSampleExportDto.class, c.getOtherSamples(), s -> inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(BurialInfoDto.class, c.getBurialInfo(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(SymptomsDto.class, c.getSymptoms(), inJurisdiction, null);
            });
        }
    }
    caseCriteria.setMustHaveCaseManagementData(previousCaseManagementDataCriteria);
    return resultList;
}

Example 2 with Event

use of de.symeda.sormas.backend.event.Event in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjb method sendConfirmedCaseNotificationsForEvents.

private void sendConfirmedCaseNotificationsForEvents(Case caze) {
    try {
        notificationService.sendNotifications(NotificationType.EVENT_PARTICIPANT_CASE_CLASSIFICATION_CONFIRMED, MessageSubject.EVENT_PARTICIPANT_CASE_CLASSIFICATION_CONFIRMED, new Object[] { caze.getDisease().getName() }, () -> {
            final Date fromDate = Date.from(Instant.now().minus(Duration.ofDays(30)));
            Map<String, User> eventResponsibleUsers = eventService.getAllEventUuidWithResponsibleUserByCaseAfterDateForNotification(caze, fromDate);
            return eventResponsibleUsers.keySet().stream().collect(Collectors.toMap(eventResponsibleUsers::get, eventUuid -> String.format(I18nProperties.getString(MessageContents.CONTENT_EVENT_PARTICIPANT_CASE_CLASSIFICATION_CONFIRMED), DataHelper.getShortUuid(eventUuid), caze.getDisease().getName(), DataHelper.getShortUuid(caze.getUuid()))));
        });
    } catch (NotificationDeliveryFailedException e) {
        logger.error("NotificationDeliveryFailedException when trying to notify event responsible user about a newly confirmed case.");
    }
}

Example 3 with Event

use of de.symeda.sormas.backend.event.Event in project SORMAS-Project by hzi-braunschweig.

the class ActionService method buildEventCriteriaFilter.

public Predicate buildEventCriteriaFilter(EventCriteria criteria, ActionQueryContext actionQueryContext) {
    CriteriaBuilder cb = actionQueryContext.getCriteriaBuilder();
    ActionJoins joins = (ActionJoins) actionQueryContext.getJoins();
    From<Action, Action> action = joins.getRoot();
    From<Action, Event> event = joins.getEvent(JoinType.INNER);
    Predicate filter = eventService.buildCriteriaFilter(criteria, new EventQueryContext(cb, actionQueryContext.getQuery(), event));
    if (criteria.getActionChangeDateFrom() != null && criteria.getActionChangeDateTo() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.between(action.get(Action.CHANGE_DATE), criteria.getActionChangeDateFrom(), criteria.getActionChangeDateTo()));
    } else if (criteria.getActionChangeDateFrom() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.greaterThanOrEqualTo(action.get(Action.CHANGE_DATE), criteria.getActionChangeDateFrom()));
    } else if (criteria.getActionChangeDateTo() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.lessThanOrEqualTo(action.get(Action.CHANGE_DATE), criteria.getActionChangeDateTo()));
    }
    if (criteria.getActionDateFrom() != null && criteria.getActionDateTo() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.between(action.get(Action.DATE), criteria.getActionDateFrom(), criteria.getActionDateTo()));
    } else if (criteria.getActionDateFrom() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.greaterThanOrEqualTo(action.get(Action.DATE), criteria.getActionDateFrom()));
    } else if (criteria.getActionDateTo() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.lessThanOrEqualTo(action.get(Action.DATE), criteria.getActionDateTo()));
    }
    if (criteria.getActionStatus() != null) {
        filter = CriteriaBuilderHelper.and(cb, filter, cb.equal(action.get(Action.ACTION_STATUS), criteria.getActionStatus()));
    }
    return filter;
}

Example 4 with Event

use of de.symeda.sormas.backend.event.Event in project SORMAS-Project by hzi-braunschweig.

the class ActionService method getEventActionExportList.

public List<EventActionExportDto> getEventActionExportList(EventCriteria criteria, Integer first, Integer max) {
    CriteriaBuilder cb = em.getCriteriaBuilder();
    CriteriaQuery<EventActionExportDto> cq = cb.createQuery(EventActionExportDto.class);
    Root<Action> action = cq.from(getElementClass());
    final ActionQueryContext actionQueryContext = new ActionQueryContext(cb, cq, action);
    ActionJoins actionJoins = (ActionJoins) actionQueryContext.getJoins();
    Join<Action, User> lastModifiedBy = actionJoins.getLastModifiedBy();
    Join<Action, User> creator = actionJoins.getCreator();
    Join<Action, Event> event = actionJoins.getEvent(JoinType.INNER);
    Join<Event, User> eventReportingUser = event.join(Event.REPORTING_USER, JoinType.LEFT);
    Join<Event, User> eventResponsibleUser = event.join(Event.RESPONSIBLE_USER, JoinType.LEFT);
    // Add filters
    Predicate filter = eventService.createUserFilter(cb, cq, event);
    if (criteria != null) {
        Predicate criteriaFilter = buildEventCriteriaFilter(criteria, actionQueryContext);
        filter = CriteriaBuilderHelper.and(cb, filter, criteriaFilter);
    }
    if (filter != null) {
        cq.where(filter);
    }
    cq.multiselect(event.get(Event.UUID), event.get(Event.EVENT_TITLE), event.get(Event.DISEASE), event.get(Event.DISEASE_VARIANT), event.get(Event.DISEASE_DETAILS), event.get(Event.EVENT_DESC), event.get(Event.EVENT_IDENTIFICATION_SOURCE), event.get(Event.START_DATE), event.get(Event.END_DATE), event.get(Event.EVOLUTION_DATE), event.get(Event.EVOLUTION_COMMENT), event.get(Event.EVENT_STATUS), event.get(Event.RISK_LEVEL), event.get(Event.EVENT_INVESTIGATION_STATUS), eventReportingUser.get(User.UUID), eventReportingUser.get(User.FIRST_NAME), eventReportingUser.get(User.LAST_NAME), eventResponsibleUser.get(User.UUID), eventResponsibleUser.get(User.FIRST_NAME), eventResponsibleUser.get(User.LAST_NAME), action.get(Action.ACTION_MEASURE), action.get(Action.TITLE), action.get(Action.CREATION_DATE), action.get(Action.CHANGE_DATE), action.get(Action.DATE), action.get(Action.ACTION_STATUS), action.get(Action.PRIORITY), lastModifiedBy.get(User.UUID), lastModifiedBy.get(User.FIRST_NAME), lastModifiedBy.get(User.LAST_NAME), creator.get(User.UUID), creator.get(User.FIRST_NAME), creator.get(User.LAST_NAME));
    cq.orderBy(cb.desc(event.get(Event.CHANGE_DATE)));
    return QueryHelper.getResultList(em, cq, first, max);
}

Example 5 with Event

use of de.symeda.sormas.backend.event.Event in project SORMAS-Project by hzi-braunschweig.

the class ActionService method getEventActionIndexList.

public List<EventActionIndexDto> getEventActionIndexList(EventCriteria criteria, Integer first, Integer max, List<SortProperty> sortProperties) {
    final CriteriaBuilder cb = em.getCriteriaBuilder();
    final CriteriaQuery<Object[]> cq = cb.createQuery(Object[].class);
    final Root<Action> action = cq.from(getElementClass());
    final ActionQueryContext actionQueryContext = new ActionQueryContext(cb, cq, action);
    ActionJoins actionJoins = (ActionJoins) actionQueryContext.getJoins();
    Join<Action, User> lastModifiedBy = actionJoins.getLastModifiedBy();
    Join<Action, User> creatorUser = actionJoins.getCreator();
    Join<Action, Event> event = actionJoins.getEvent(JoinType.INNER);
    Join<Event, User> eventReportingUser = event.join(Event.REPORTING_USER, JoinType.LEFT);
    Join<Event, User> eventResponsibleUser = event.join(Event.RESPONSIBLE_USER, JoinType.LEFT);
    // Add filters
    Predicate filter = eventService.createUserFilter(cb, cq, event);
    if (criteria != null) {
        Predicate criteriaFilter = buildEventCriteriaFilter(criteria, actionQueryContext);
        filter = CriteriaBuilderHelper.and(cb, filter, criteriaFilter);
    }
    if (filter != null) {
        cq.where(filter);
    }
    cq.multiselect(event.get(Event.UUID), event.get(Event.EVENT_TITLE), event.get(Event.DISEASE), event.get(Event.DISEASE_VARIANT), event.get(Event.DISEASE_DETAILS), event.get(Event.EVENT_IDENTIFICATION_SOURCE), event.get(Event.START_DATE), event.get(Event.END_DATE), event.get(Event.EVENT_STATUS), event.get(Event.RISK_LEVEL), event.get(Event.EVENT_INVESTIGATION_STATUS), event.get(Event.EVENT_MANAGEMENT_STATUS), eventReportingUser.get(User.UUID), eventReportingUser.get(User.FIRST_NAME), eventReportingUser.get(User.LAST_NAME), eventResponsibleUser.get(User.UUID), eventResponsibleUser.get(User.FIRST_NAME), eventResponsibleUser.get(User.LAST_NAME), action.get(Action.ACTION_MEASURE), event.get(Event.EVOLUTION_DATE), action.get(Action.TITLE), action.get(Action.CREATION_DATE), action.get(Action.CHANGE_DATE), action.get(Action.DATE), action.get(Action.ACTION_STATUS), action.get(Action.PRIORITY), lastModifiedBy.get(User.UUID), lastModifiedBy.get(User.FIRST_NAME), lastModifiedBy.get(User.LAST_NAME), creatorUser.get(User.UUID), creatorUser.get(User.FIRST_NAME), creatorUser.get(User.LAST_NAME), event.get(Event.CHANGE_DATE));
    cq.distinct(true);
    if (sortProperties != null && !sortProperties.isEmpty()) {
        List<Order> order = new ArrayList<>(sortProperties.size());
        for (SortProperty sortProperty : sortProperties) {
            Expression<?> expression;
            switch(sortProperty.propertyName) {
                case EventActionIndexDto.EVENT_UUID:
                    expression = event.get(Event.UUID);
                    break;
                case EventActionIndexDto.EVENT_TITLE:
                    expression = cb.lower(event.get(Event.EVENT_TITLE));
                    break;
                case EventActionIndexDto.EVENT_DISEASE:
                    expression = event.get(Event.DISEASE);
                    break;
                case EventActionIndexDto.EVENT_DISEASE_VARIANT:
                    expression = event.get(Event.DISEASE_VARIANT);
                    break;
                case EventActionIndexDto.EVENT_IDENTIFICATION_SOURCE:
                    expression = event.get(Event.EVENT_IDENTIFICATION_SOURCE);
                    break;
                case EventActionIndexDto.EVENT_START_DATE:
                    expression = event.get(Event.START_DATE);
                    break;
                case EventActionIndexDto.EVENT_END_DATE:
                    expression = event.get(Event.END_DATE);
                    break;
                case EventActionIndexDto.EVENT_STATUS:
                    expression = event.get(Event.EVENT_STATUS);
                    break;
                case EventActionIndexDto.EVENT_INVESTIGATION_STATUS:
                    expression = event.get(Event.EVENT_INVESTIGATION_STATUS);
                    break;
                case EventActionIndexDto.EVENT_MANAGEMENT_STATUS:
                    expression = event.get(Event.EVENT_MANAGEMENT_STATUS);
                    break;
                case EventActionIndexDto.EVENT_EVOLUTION_DATE:
                    expression = event.get(Event.EVOLUTION_DATE);
                    break;
                case EventActionIndexDto.EVENT_RISK_LEVEL:
                    expression = event.get(Event.RISK_LEVEL);
                    break;
                case EventActionIndexDto.EVENT_REPORTING_USER:
                    expression = event.get(Event.REPORTING_USER);
                    break;
                case EventActionIndexDto.EVENT_RESPONSIBLE_USER:
                    expression = event.get(Event.RESPONSIBLE_USER);
                    break;
                case EventActionIndexDto.ACTION_CHANGE_DATE:
                    expression = action.get(Action.CHANGE_DATE);
                    break;
                case EventActionIndexDto.ACTION_CREATION_DATE:
                    expression = action.get(Action.CREATION_DATE);
                    break;
                case EventActionIndexDto.ACTION_DATE:
                    expression = action.get(Action.DATE);
                    break;
                case EventActionIndexDto.ACTION_PRIORITY:
                    expression = action.get(Action.PRIORITY);
                    break;
                case EventActionIndexDto.ACTION_STATUS:
                    expression = action.get(Action.ACTION_STATUS);
                    break;
                case EventActionIndexDto.ACTION_TITLE:
                    expression = cb.lower(action.get(Action.TITLE));
                    break;
                case EventActionIndexDto.ACTION_LAST_MODIFIED_BY:
                    expression = cb.selectCase().when(cb.isNotNull(action.get(Action.LAST_MODIFIED_BY)), cb.lower(action.get(Action.LAST_MODIFIED_BY).get(User.LAST_NAME))).otherwise(cb.lower(action.get(Action.CREATOR_USER).get(User.LAST_NAME)));
                    break;
                default:
                    throw new IllegalArgumentException(sortProperty.propertyName);
            }
            order.add(sortProperty.ascending ? cb.asc(expression) : cb.desc(expression));
        }
        cq.orderBy(order);
    } else {
        cq.orderBy(cb.desc(event.get(Event.CHANGE_DATE)));
    }
    return createQuery(cq, first, max).unwrap(org.hibernate.query.Query.class).setResultTransformer(new EventActionIndexDtoReasultTransformer()).getResultList();
}